DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGAP54D and arhgap45b

DIOPT Version :10

Sequence 1:NP_611236.2 Gene:RhoGAP54D / 36996 FlyBaseID:FBgn0034249 Length:1004 Species:Drosophila melanogaster
Sequence 2:XP_005170570.1 Gene:arhgap45b / 555849 ZFINID:ZDB-GENE-071213-2 Length:1136 Species:Danio rerio


Alignment Length:529 Identity:112/529 - (21%)
Similarity:187/529 - (35%) Gaps:152/529 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 ELELNTDEFDLPC-----HEIV-----YEDKG--------KLKKWNRLSK-----KHRLGHGAAA 84
            |.:.|...|:.|.     .|||     :.:.|        ||:|....||     .:....||..
Zfish   687 EKDANVTSFETPNINGIEPEIVVPTGPFRNIGLSKAAQTHKLRKLRSPSKCRECDSYVYFQGAEC 751

  Fly    85 TSCAAGSASKSVGNSPTETLQQQIDPGFLMHLQEL--KEFLMLEKN------------------- 128
            ..|......:.:     ||:..|.....|....:|  ::||.:..|                   
Zfish   752 EECFLACHKRCL-----ETIAIQCGHKKLQGRLQLFGQDFLQVSSNSPDGIPFIIKKCIAEIERR 811

  Fly   129 -LTQEGLFRKAGAVSRQNELRMHIQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPA 192
             |..:|::|..|..:|..:|....::.|.| :||:..|.||.:.|.|.:|.:||||::....|.:
Zfish   812 ALRMKGIYRVNGVKTRVEKLCQAFENGKEL-VELSQSSPHDISNVLKLYLRQLPEPIMPFRLYNS 875

  Fly   193 HLQIAPLCQALNGQTTATAERQQHLLN-----SVQLLLLL---------LPEEHRELLQHIIEML 243
            .:.:|....|:.|...|.:.:...|::     ..:||:|:         ||:.:...|:::...|
Zfish   876 LMGLAKESLAVVGPEGADSGKGPDLMDLGPETDPELLVLVDRLKNLLKELPKPNTATLRYLARHL 940

  Fly   244 HAVAKHEKSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTY----MIVRGLDIFEVP 304
            ..:|:.|..||||..||..:|.|.|:.||.....|      .:||:|.|    .||..|.:| .|
Zfish   941 RRIAELEDDNKMSPSNLGIVFGPSLMRPRPSGATV------SLSSLVDYPYQARIVETLIVF-YP 998

  Fly   305 GKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRAATAAATNTNNTDTELAQLY 369
            ....::.........|.:::..:.::||.    ...|......|..|.          .||.:|.
Zfish   999 SIFQSESSRPASSSTRTQSLQQQSSIDEE----RCSNDEQGLPDEPAA----------VELDKLE 1049

  Fly   370 AHIQSMPESSKKRRLIKQFNKQNGQGTPLQLVVMNRLKNNEATRSAKSLGDSIKKHIFHKSLMSR 434
            .|.:|.                  .|||                      ||::    |...:..
Zfish  1050 DHAESC------------------TGTP----------------------DSLE----HSLDLDS 1070

  Fly   435 TPKRVPPSFHLASGSETPNMSHVKPPKMRVLFQSPT----------PPTPTSSTITSVSLSTNTR 489
            .|:...|.      .||...|  :|..:.|..||.:          ||.....:.:..:|:.|..
Zfish  1071 DPEAEQPV------DETSIQS--RPAVLLVTLQSSSADPPALPESEPPELEDQSHSLAALNINQS 1127

  Fly   490 HQLQKSISS 498
            :...|:::|
Zfish  1128 NNTTKTLTS 1136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP54DNP_611236.2 RhoGAP 107..313 CDD:470621 62/245 (25%)
arhgap45bXP_005170570.1 BAR 309..553 CDD:472257
C1_GMIP-like 724..774 CDD:410366 11/54 (20%)
RhoGAP 782..996 CDD:470621 57/220 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.