DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGAP54D and Gmip

DIOPT Version :10

Sequence 1:NP_611236.2 Gene:RhoGAP54D / 36996 FlyBaseID:FBgn0034249 Length:1004 Species:Drosophila melanogaster
Sequence 2:NP_001100778.1 Gene:Gmip / 306357 RGDID:1565577 Length:969 Species:Rattus norvegicus


Alignment Length:448 Identity:97/448 - (21%)
Similarity:174/448 - (38%) Gaps:91/448 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 EFLMLEKNLTQE--------------------GLFRKAGAVSRQNELRMHIQHDKPLNLELAGFS 165
            :||.|.::..:|                    |::|.:|:..|...|....::.:.| :||:|.|
  Rat   549 DFLQLPRDFPEEVPFVVTRCTAEIEHRALGLQGIYRVSGSRVRVERLCQAFENGRAL-VELSGNS 612

  Fly   166 AHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLCQALNGQTTATAERQQHLLNSVQLLLLLLPE 230
            .||..:|.|.||.||.:|::....|.|.:.:|....|..|....|......::.|::.||:.||:
  Rat   613 PHDITSVLKRFLQELTDPVVPFHFYDAFISLAKTLHADPGDDPGTPSPSPEIIRSLKTLLVQLPD 677

  Fly   231 EHRELLQHIIEMLHAVAKHEKSNKMSADNLATLFTPHLICPRQLP------PEVLHYQAKKMSSI 289
            .:...|:|::..|..||...|.|||||:||..:|.|.|:.|...|      |......:...:.:
  Rat   678 SNYSTLRHLVAHLFRVAARFKENKMSANNLGIVFGPTLLRPPDGPGATSASPVACLLDSGHQAQL 742

  Fly   290 VTYMIVRGLDIF---EVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRAA 351
            |.::||....||   |:|  |:::            .::.:..|..::.:.|..:........:.
  Rat   743 VEFLIVHYEQIFGMDELP--LTSE------------PLTQDPALAPALLESSPQHPALLVAQDSQ 793

  Fly   352 TAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGTPLQLVVMNRLKNNEATRSAK 416
            .....:.::.|   .:.::.::..|:.:.......|.|::.              :..|.||...
  Rat   794 PLTIASDSSPD---PKQHSALEKCPKVAPPELTALQSNRKE--------------EEEEDTRDGA 841

  Fly   417 SLGDSIKKHIFHKSLM--------SRTPKR-----VPPSFHLASG---------SETP-NMSHVK 458
            ..|.|   |.....|:        ||.|.:     |.|..|..|.         .||| .:|.|.
  Rat   842 GDGSS---HSPEDLLLVAQSRGHFSRQPVKYSRGGVRPVTHQLSSLALVASKLCEETPITVSAVH 903

  Fly   459 PPKMRVLFQSPTPPTPTSSTITSVSLSTNTRH-QLQKSISSASLKIESSSSDSSSSCA 515
            ...:|.....|...:|...|:....|   .:| ::.:..:....|::|.:...:|.||
  Rat   904 RGSLRARGLGPAAASPEGGTLRRNPL---PKHFEITQETARLLSKLDSEAVSRTSCCA 958

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGAP54DNP_611236.2 RhoGAP 107..313 CDD:470621 61/220 (28%)
GmipNP_001100778.1 BAR 111..311 CDD:472257
C1_GMIP-like 489..538 CDD:410366
RhoGAP 546..749 CDD:470621 55/200 (28%)
Blue background indicates that the domain is not in the aligned region.

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