Sequence 1: | NP_523778.2 | Gene: | Dcr-2 / 36993 | FlyBaseID: | FBgn0034246 | Length: | 1722 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_197532.3 | Gene: | DCL4 / 832154 | AraportID: | AT5G20320 | Length: | 1702 | Species: | Arabidopsis thaliana |
Alignment Length: | 1796 | Identity: | 402/1796 - (22%) |
---|---|---|---|
Similarity: | 687/1796 - (38%) | Gaps: | 481/1796 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 RGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELARQQ 73
Fly 74 AMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYVALSSLSVVII 138
Fly 139 DECHHG--TGHHPFREFMRLFTIANQTKLPRVVGLTG--VLIKGN-EITNVATKLKELEITYRGN 198
Fly 199 IITVSDTKEMENVMLYATKPTEVMVSFPHQEQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSK 263
Fly 264 SLQ-----CLRD-------------PSKKSFVKQLFNDFLYQMKEYGIYAA-SIAIISLIVEFDI 309
Fly 310 KRRQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRFLMSL 374
Fly 375 -KVSFADKDPKDICCLVFVERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVL 438
Fly 439 ERKWQKSAIQQFRDGNANLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFV 503
Fly 504 LFTADKEREKTIQQIYQYRKAHNDIAEYLKDRVLEKTEP----ELYEIKGHFQDDIDPFTNENGA 564
Fly 565 VLLPNNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDT 629
Fly 630 IYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGDSVTATV 694
Fly 695 NKADKSKDRTYKTECPLEF---YDALPRVGEI-CYAYEIFLEPQFESCEYTEHMYLNLQTPRNYA 755
Fly 756 ILLRNKLPRLAE-MPL---FSNQGKLHVRVANAPLEVIIQNSEQLELLHQFHGMVFR------DI 810
Fly 811 LKIWHPFFVLD--RRSKENSYLVVPLILGAGEQK-CFDWELMTNFRRLPQSHGSNVQQREQQPAP 872
Fly 873 RPEDFEGKIVTQ-WYANYDKPMLVTKVHRELTPLSYMEKNQQDKTYYEFTMSKYGNRIGDVVHKD 936
Fly 937 KFMIEVRDLTEQLTFYVHNRGKFNAKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYF 1001
Fly 1002 LLHAEALRKRFNTYLNLHLLPFNGTDYMPRPLEIDYSLKRNVDPLGNVIPTEDIEEPKSLLEPMP 1066
Fly 1067 TKSIEASVANLEITEFENPWQKYMEPVDLSRNLLSTYPVELDYYYHFSVGNVCEMNEMDFEDKEY 1131
Fly 1132 WAKNQFHMPTGNIYGNRTPAKTNANVPALMPSKPTVRGKVKPLLILQKTVSKEHITPAEQGEF-- 1194
Fly 1195 ------LAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNL 1253
Fly 1254 LFCLIDADIPKTLNTIQFTPRYTWLPPGISLPHNVLALWRENPEFAKIIGPHNLRDLALGDEESL 1318
Fly 1319 VKGN-----CSDI------NYNRFVEGCRANGQSFYAGADFSSEVNFCVGLVTIPNKVIADTLEA 1372
Fly 1373 LLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGGKK-----MRANVNTTEIDGFLIN 1432
Fly 1433 HYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGS-YQELEFIGDAILDFLISAYIFENNTKMNP 1496
Fly 1497 GALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEA 1561
Fly 1562 DVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLD 1626
Fly 1627 CR-DLQRTWEVIFNLFEP-----ELQEFTRKVPINHIRQLVE----HKHAKPVFSSP-----IVE 1676
Fly 1677 GETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQQL 1717 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dcr-2 | NP_523778.2 | MPH1 | 6..542 | CDD:224036 | 135/557 (24%) |
DEXDc | 22..173 | CDD:238005 | 50/152 (33%) | ||
Dicer_PBD | 241..343 | CDD:277191 | 20/120 (17%) | ||
HELICc | <438..495 | CDD:197757 | 17/56 (30%) | ||
Dicer_dimer | 572..665 | CDD:281376 | 27/92 (29%) | ||
PAZ | 843..1004 | CDD:198017 | 21/161 (13%) | ||
RIBOc | 1194..1391 | CDD:238333 | 49/215 (23%) | ||
Rnc | 1433..1719 | CDD:223644 | 88/301 (29%) | ||
RIBOc | 1448..1649 | CDD:238333 | 67/207 (32%) | ||
dsrm | 1653..1717 | CDD:278464 | 15/72 (21%) | ||
DCL4 | NP_197532.3 | MPH1 | 124..640 | CDD:224036 | 136/562 (24%) |
DEXDc | 138..289 | CDD:238005 | 51/154 (33%) | ||
Helicase_C | 470..589 | CDD:278689 | 35/127 (28%) | ||
Dicer_dimer | 657..740 | CDD:281376 | 27/92 (29%) | ||
PAZ | 937..1080 | CDD:198017 | 42/307 (14%) | ||
RIBOc | 1104..1261 | CDD:238333 | 50/207 (24%) | ||
Rnc | 1285..1531 | CDD:223644 | 91/320 (28%) | ||
RIBOc | 1308..1452 | CDD:238333 | 64/195 (33%) | ||
DSRM | 1463..1527 | CDD:214634 | 15/71 (21%) | ||
DSRM | 1621..>1681 | CDD:238007 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 1 | 1.000 | 113 | 1.000 | Domainoid score | I2031 |
eggNOG | 1 | 0.900 | - | - | E1_COG0571 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG57860 | |
OrthoDB | 1 | 1.010 | - | - | D1337630at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002051 | |
OrthoInspector | 1 | 1.000 | - | - | mtm1149 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101152 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1728 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
11 | 10.690 |