DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dcr-2 and RTL1

DIOPT Version :10

Sequence 1:NP_523778.2 Gene:Dcr-2 / 36993 FlyBaseID:FBgn0034246 Length:1722 Species:Drosophila melanogaster
Sequence 2:NP_001328413.1 Gene:RTL1 / 827212 AraportID:AT4G15417 Length:289 Species:Arabidopsis thaliana


Alignment Length:324 Identity:84/324 - (25%)
Similarity:137/324 - (42%) Gaps:68/324 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly  1403 PLTQL---LNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRI 1464
            ||..:   |:..:.||.....:.:.:.|. |:....|||.|.|.|||:..||:|.|..||..:: 
plant    22 PLVSMGSQLSNAIDGKDNTKTIGSADPDQ-LMEIESLEKILNYKFKDKSLLLKAFTDASYVDDK- 84

  Fly  1465 TGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAEN 1529
            :.||:.||.:||:||:..|.....:...|..||.||.||:..|:...||.:.|.|:|:.::..:.
plant    85 SESYELLELLGDSILNMGIIYDFIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKK 149

  Fly  1530 AKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGV 1594
            ..|.|.|.:||...|..                    ||            |:|..:.       
plant   150 PLLEEQILEFVEAMEKY--------------------PL------------HSNGLLK------- 175

  Fly  1595 PPKGEFNMSTNVDVPKALGDVLEALIAAVYLDCRDLQRTWEVIFNLFEPELQ-EFTRKVPINHIR 1658
                         |||.|.|::|:.|.|:::||...:..|:||..|.||.:. :..:..|:..:.
plant   176 -------------VPKVLADIVESTIGAIFMDCNSTETVWKVIKPLLEPIIHLDKMKSHPMTELN 227

  Fly  1659 QLVEHKHAKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSN---KDQAKLSAAKHALQQLSK 1719
            ::.:.::.|........|.:|.       |.....|..|.|.:   |:.|:..|||:|:...:|
plant   228 EMCQKRNLKLTSKDTWEENQTY-------CFHIEDKFVGCGHHPVKKETARNFAAKNAIDNFAK 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-2NP_523778.2 DEXHc_dicer 6..204 CDD:350792
Dicer_PBD 241..343 CDD:277191
SF2_C_dicer 360..506 CDD:350189
Dicer_dimer 571..670 CDD:460900
PAZ 843..1004 CDD:198017
RIBOc 1194..1391 CDD:238333
RIBOc 1448..1649 CDD:238333 54/201 (27%)
dsrm 1653..1717 CDD:425434 14/66 (21%)
RTL1NP_001328413.1 RIBOc 69..216 CDD:238333 54/199 (27%)
DSRM 222..280 CDD:214634 14/64 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.