Sequence 1: | NP_523778.2 | Gene: | Dcr-2 / 36993 | FlyBaseID: | FBgn0034246 | Length: | 1722 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_008763126.1 | Gene: | Dicer1 / 299284 | RGDID: | 1309381 | Length: | 1918 | Species: | Rattus norvegicus |
Alignment Length: | 2001 | Identity: | 514/2001 - (25%) |
---|---|---|---|
Similarity: | 853/2001 - (42%) | Gaps: | 427/2001 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 PRGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELARQ 72
Fly 73 QAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYVALSSLSVVI 137
Fly 138 IDECHHGTGHHPFREFMRLFTIANQTKLPRVVGLTGVLIKGN-EITNVATKLKELEITYRGNIIT 201
Fly 202 VSDTKEMENVMLYATKPTEVMVSF-PHQEQVLTVTRLISAEIEKFYVSLDLMNIGVQPIRRSKSL 265
Fly 266 QCLRDPSKKSFVKQLFNDFLYQMKEYGIYAASIAIISLIVEFD--IKRRQAETLSVKLMHRTAL- 327
Fly 328 ---TLCEKIRHLLVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRFLMSLK-------------- 375
Fly 376 ----------VSFADKDPKD----------------------ICCLVFVERRYTCKCIYGLLLNY 408
Fly 409 IQSTPELRNVLTPQFM----VGRNN-ISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGI 468
Fly 469 DVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKEREKTIQQIYQYRKAHNDIAEYLK 533
Fly 534 DRVLEKTEPELYEIKGHFQDDIDPF------TNENGAVLLPNNALAILHRYCQTIPTDAFGFVIP 592
Fly 593 WFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLG 657
Fly 658 ELNERFVP---KTLKERVASIADVHFEHWNKYGDSVTATVNKADKSKDR-TYKTECPLEFYDALP 718
Fly 719 RVGEICYAYEI---FLEPQFESCEYTEH-MYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHV 779
Fly 780 RVANAPLEVIIQNSEQLELLHQFHGMVFRDILKIWHPFFVLDRRSKENSYLVVPL-ILGAGEQKC 843
Fly 844 FDWELMTNFRRLPQSHG--SNVQQREQQPAPRPEDFEGKIVTQWYANYDKP--MLVTKVHRELTP 904
Fly 905 LSYMEKNQQDKTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRGK-----FN 960
Fly 961 AKSKAKM-----KVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKR--FNTYLNL 1018
Fly 1019 HLLPFNGTDYMPRPLEIDYSLKRNVDPLGNVIPTEDIEEPKSLLE-----PMPTKSIEASVANLE 1078
Fly 1079 IT--EFENPWQKYME----PVDLSRNLLSTYPVEL----DYYYHFSVGN---------VCEMNEM 1124
Fly 1125 DFEDKEYWAKNQFHMPTGNIY--------GNRTPAKT------NANV------------PALMPS 1163
Fly 1164 KPTVRGKVKPLLILQKTVSKEHITPA---EQGEFLAAITASSAADVFDMERLEILGDSFLKLSAT 1225
Fly 1226 LYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGISLPHN--- 1287
Fly 1288 -------------VLA----------------LWRENPEFAKI---------------------- 1301
Fly 1302 --------IGPHNLRDLA----LGDEESL----VKGNCSDINYNRFVEGCRANGQSFYAGADF-- 1348
Fly 1349 ----SSEVNFCVGLVT--------------IPNKVIADTLEALLGVIVKNYGLQHA--------F 1387
Fly 1388 KMLEYFK------------------------ICRADIDKPLTQLLNLELGGKKM--RANVNTTEI 1426
Fly 1427 DGFLINHYY-----LEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAY 1486
Fly 1487 IFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVT 1551
Fly 1552 NYVRILLEEADVQPTPLDLDDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVL 1616
Fly 1617 EALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSPIVEGETV 1680
Fly 1681 MVSCQFTCMEK--------TIKVYGFGSNKDQ------AKLSAAKHALQQL 1717 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Dcr-2 | NP_523778.2 | MPH1 | 6..542 | CDD:224036 | 160/592 (27%) |
DEXDc | 22..173 | CDD:238005 | 56/150 (37%) | ||
Dicer_PBD | 241..343 | CDD:277191 | 24/107 (22%) | ||
HELICc | <438..495 | CDD:197757 | 23/56 (41%) | ||
Dicer_dimer | 572..665 | CDD:281376 | 24/92 (26%) | ||
PAZ | 843..1004 | CDD:198017 | 49/178 (28%) | ||
RIBOc | 1194..1391 | CDD:238333 | 76/294 (26%) | ||
Rnc | 1433..1719 | CDD:223644 | 103/305 (34%) | ||
RIBOc | 1448..1649 | CDD:238333 | 74/201 (37%) | ||
dsrm | 1653..1717 | CDD:278464 | 20/77 (26%) | ||
Dicer1 | XP_008763126.1 | DEXHc_dicer | 42..239 | CDD:350792 | 67/196 (34%) |
Dicer_PBD | 271..365 | CDD:277191 | 24/110 (22%) | ||
SF2_C_dicer | 372..564 | CDD:350189 | 54/195 (28%) | ||
Dicer_dimer | 630..718 | CDD:397444 | 26/97 (27%) | ||
PAZ_dicer_like | 886..1008 | CDD:239209 | 25/125 (20%) | ||
RIBOc | 1296..>1387 | CDD:197778 | 41/90 (46%) | ||
RIBOc | 1678..1842 | CDD:238333 | 74/200 (37%) | ||
DSRM_DICER | 1847..1909 | CDD:380680 | 20/78 (26%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 103 | 1.000 | Domainoid score | I6656 |
eggNOG | 1 | 0.900 | - | - | E1_COG0571 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG57860 | |
OrthoDB | 1 | 1.010 | - | - | D126291at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0002051 | |
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 1 | 0.900 | - | - | OOG6_101152 | |
Panther | 1 | 1.100 | - | - | O | PTHR14950 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X1728 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
9 | 8.830 |