DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dcr-2 and ddx58

DIOPT Version :9

Sequence 1:NP_523778.2 Gene:Dcr-2 / 36993 FlyBaseID:FBgn0034246 Length:1722 Species:Drosophila melanogaster
Sequence 2:NP_001293024.1 Gene:ddx58 / 100333797 ZFINID:ZDB-GENE-090821-7 Length:937 Species:Danio rerio


Alignment Length:773 Identity:158/773 - (20%)
Similarity:286/773 - (36%) Gaps:202/773 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KPRGYQLRLVD-HLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVELA 70
            |.|.||..|:. .:...|.|:..|||.|||.||:.:.:...:     :..|..:..|:...|::.
Zfish   250 KLREYQRELMTAAVNGQNTIICAPTGCGKTIVALGICEEHLK-----LLRGRAKIAFLATKVDVY 309

  Fly    71 RQQAMAVR-----RCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYVA- 129
            .||....:     :..|.:|....|:..:.  .|.:    |:.:.::|.|||:.::.:....:. 
Zfish   310 EQQYKLFQEHFSSKDPNIRVTGMCGDMALS--VRML----IETHDIVVLTAQILVNALQSGEMEN 368

  Fly   130 LSSLSVVIIDECHHGTGHHPFREFMRLF----TIANQTKLPRVVGLTGVLIKG---------NEI 181
            |..|:::::||||:.||.||:...|..:    ...|.:.||::||||..:..|         |.:
Zfish   369 LQLLTLILLDECHNTTGKHPYNNIMTRYLDSKLTGNGSPLPQIVGLTASVGIGSFKNQMEAENNV 433

  Fly   182 TNVATKLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMVSFPH-----QEQVLTVTRLISAE 241
            |.:...:....||      |||  |.::.:..|...|.:   .|.|     .:..:.:.:.|.:.
Zfish   434 TQLCANMDTRVIT------TVS--KHLDELRSYVHTPEK---EFFHVFQSPSDPFIRIIQNIMSN 487

  Fly   242 IE----KFYVSLDLMNIG------------VQPIRRS-KSLQCLRDPSKKSFVKQL--------- 280
            ||    |.|....|.||.            :..:::| :.||......::...::|         
Zfish   488 IEQMAKKTYNIESLSNISNREYGSQKYEQWIVSVQKSCRVLQMQNADGERRICRELCNYTEHLRK 552

  Fly   281 FND-------------------FLYQMKEYGIYAASIAIISLIVEFDIKRRQAETLSVKLMHRTA 326
            :||                   |..|::..|.......:.:|   :|.:|.|.:.|:.:......
Zfish   553 YNDALIINEDARTIDALDYLDVFFQQVRNAGFQTTERKLTAL---YDTQRPQLQCLATEGQQNPK 614

  Fly   327 LTLCEKIRHLLVQKLQDMTYDDDDDNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVF 391
            |   |::|.:|.::..        :|..|..|                               :|
Zfish   615 L---EELRFILEEEYH--------NNQETRTV-------------------------------MF 637

  Fly   392 VERRYTCKCIYGLLLNYIQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGN-A 455
            |..|    .:...:..:|..|..|: .|.|..::|:...|....|.:....|:..:..|:..: :
Zfish   638 VRTR----ALADAMKKWIDDTDTLK-FLKPGVLIGKGRKSNFTGSGMTPSNQRGVLDTFKSSDQS 697

  Fly   456 NLMICSSVLEEGIDVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKER-EKTIQQIY 519
            .::|.:||.:||||:..||.|.:.:.|......||.:||.|...::..|.::..|| ||      
Zfish   698 KMLIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSRCFLISSSAERIEK------ 756

  Fly   520 QYRKAHNDIAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNENGA-----VLLPN-----NALAI 574
                   :....:|:|::|.....|..........:|....|:.|     ...|:     ::..:
Zfish   757 -------EKMNMMKERLVEAAIVALQSRPADLSFKVDILQKEDKARRDFLSASPDKPKTQDSFKL 814

  Fly   575 LHRYCQTIPTDAFGFVIPWFHVLQEDER---DR-IFGVSAKGKHVISIN----------MPVNC- 624
            |...|:     .|........|:||...   || ||...::..|...||          :.|.| 
Zfish   815 LCAKCK-----MFACQSDDLRVVQESHHIVVDRSIFSRCSRVPHRKPINFCGFSKKEKMLCVECK 874

  Fly   625 ----------MLRD----TIYSDPMDNVKTAKISAAFKACKVLYSLGELN-ERFVPKT 667
                      .::|    .|.|..:.|:.|.:.....|.|||.:::.|.: ....|:|
Zfish   875 HDWGLVVSYLTIQDLPLLKIESFVVQNLVTGEQHYFRKWCKVTFAIREFDMTEITPET 932

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dcr-2NP_523778.2 MPH1 6..542 CDD:224036 126/606 (21%)
DEXDc 22..173 CDD:238005 41/160 (26%)
Dicer_PBD 241..343 CDD:277191 25/146 (17%)
HELICc <438..495 CDD:197757 16/57 (28%)
Dicer_dimer 572..665 CDD:281376 25/122 (20%)
PAZ 843..1004 CDD:198017
RIBOc 1194..1391 CDD:238333
Rnc 1433..1719 CDD:223644
RIBOc 1448..1649 CDD:238333
dsrm 1653..1717 CDD:278464
ddx58NP_001293024.1 DD 2..91 CDD:301326
CARD_RIG-I_r2 99..187 CDD:260076
P-loop_NTPase 250..416 CDD:304359 46/176 (26%)
MDA5_ID 475..609 CDD:277189 22/136 (16%)
Helicase_C 616..739 CDD:278689 34/166 (20%)
RIG-I_C 811..923 CDD:276943 24/116 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1337630at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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