DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and RABA1i

DIOPT Version :9

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_174177.1 Gene:RABA1i / 839755 AraportID:AT1G28550 Length:218 Species:Arabidopsis thaliana


Alignment Length:215 Identity:94/215 - (43%)
Similarity:122/215 - (56%) Gaps:15/215 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ETYDYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTAGQ 67
            :.||||||.::.|.:|.|||.||..|..:.|..||..||||||.:|.:....|.||.||||||||
plant     8 DDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQIWDTAGQ 72

  Fly    68 ERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNKKDLEEARDVT 132
            ||:|::|.:|||||.|||||||.|...:|..:..||.:.|.....||||:|||||.||...|.::
plant    73 ERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAIS 137

  Fly   133 FLEASTFAQENELIFLETSAKTGENVEEAFLKCSKTI---LAK--IETGELDPERI---GSGIQY 189
            ..||..||:.....|:||||....||:.||.:....|   ::|  :|.|: ||...   |..|..
plant   138 TEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAGD-DPTTALPKGQMINV 201

  Fly   190 GGAALRNLQTRQRSINKPDC 209
            ||      :....::.||.|
plant   202 GG------RDDISAVKKPGC 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 77/159 (48%)
RABA1iNP_174177.1 Rab11_like 11..175 CDD:206660 80/163 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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