DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and RABG1

DIOPT Version :10

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_568566.1 Gene:RABG1 / 833958 AraportID:AT5G39620 Length:204 Species:Arabidopsis thaliana


Alignment Length:520 Identity:106/520 - (20%)
Similarity:171/520 - (32%) Gaps:159/520 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   419 YWFIEALGL-RRPYIWEYSRLNMT--NTV--LSKRKLTWFVAEGLVDGW--------DDPRFPTV 470
            ::.|..:|| .|..|:....::::  .||  .|.:.|.||....|.: |        ||      
plant   113 FYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFN-WNHVILIVSDD------ 170

  Fly   471 RGILRRGMTVEGLREFIIAQGSSKSVV--FMEWDKIWAFNK------KVI--DPIAPRYTAL--- 522
                ..|...:...|.::.:..|||..  :...|::...||      ||:  :|.....|||   
plant   171 ----HEGRAAQKKLETLLEEKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLE 231

  Fly   523 --ESEARVPVNVAGVQPGTMQAAVHPKNA----------------DIGTKTVHYGPRVLIDLADA 569
              |.||||.:..|.....|   ||:...|                :|....:.|.|..:|.|   
plant   232 AKELEARVIILSASEDDAT---AVYKSAAMLDMTGAGYVWLVGEREISGSALRYAPDGIIGL--- 290

  Fly   570 KELKEGENATFINWGNLLIRKVNRGADGVPVSVDATPNLDNKDYKKTLKLTWLCELPADQYTPTY 634
             :|..|:|.:            ...:|.|.|:..|              :..|.|:......|..
plant   291 -QLINGKNES------------AHISDAVAVAAQA--------------IHELFEMENITDPPRG 328

  Fly   635 CVYFEHI-----ISKPVL--GKDEDFKSYIGHQTRTEVPMLGDPELKRLKKGDIIQLQRR----- 687
            ||...:|     :.|.||  .|..|     |...|.|....||   ::.....|:.||.|     
plant   329 CVGNTNIWKTGPLFKRVLMSSKYPD-----GVTGRIEFNEDGD---RKFANYSIMNLQNRKLVQV 385

  Fly   688 GFFKVDQAYQPASE--FSGAETPIVLFAIPDGHVAAVPTANVPKKETAGESKKSKQQAAVKPSSG 750
            |.|......|...:  :.|.||     ..|.|:..:.....|        :...:....|||:..
plant   386 GIFNGSHVIQNDRKIIWPGGET-----ERPQGYQMSTRLKIV--------TIHQEPFVYVKPTMT 437

  Fly   751 SSASDAAHLNESITQQGEQVRKLKAD----------KAPKA----DVDAAVKVLLELKAQYKAQT 801
            ...     ..|..|..|:.::|:..:          ..|:.    .:|..:|:..|:...|:...
plant   438 DGT-----CREEYTINGDPIKKVICNGPNETIPGRPTVPQCCYGFCIDLLIKLAREMNFTYEVHL 497

  Fly   802 GSDWKPGAAVVVASAAPAAGSSDADSLNGKIVEQGNLVRDLKAKKAAKPEVDAAVKTLLELKAQY 866
            .:|.|.|....|       .:|:....||.:   |.|:       :.:.::..|..|:...:|||
plant   498 VADGKFGTQERV-------NNSNKKEWNGMM---GELL-------SGQADMIVAPLTINNERAQY 545

  Fly   867  866
            plant   546  545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696
RABG1NP_568566.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..179 CDD:476819 16/76 (21%)
Blue background indicates that the domain is not in the aligned region.

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