DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and RABA1e

DIOPT Version :9

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_193578.1 Gene:RABA1e / 827574 AraportID:AT4G18430 Length:217 Species:Arabidopsis thaliana


Alignment Length:214 Identity:92/214 - (42%)
Similarity:122/214 - (57%) Gaps:20/214 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 ETYDYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTAGQ 67
            :.||||||.::||.:|.|||.||..|..::|..:|..||||||.:|.|:|..|.:|.|:||||||
plant     8 DDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEKIIKAQLWDTAGQ 72

  Fly    68 ERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNKKDLEEARDVT 132
            ||:|::|.:|||||.|||||||.|...:|..:..||.:.|.....|:||:|||||.||...|.|.
plant    73 ERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGNKADLRHLRAVP 137

  Fly   133 FLEASTFAQENELIFLETSAKTGENVEEAF----LKCSKTILAKIETGELDPERI--GSGIQYGG 191
            ..||.:|::...:.|:||||....|||:||    .:..:.:..|...|..||..:  |..|..| 
plant   138 TEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSRKALDGTGDPMSLPKGQTIDIG- 201

  Fly   192 AALRNLQTRQRSINKPDCT 210
                         ||.|.|
plant   202 -------------NKDDVT 207

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 77/163 (47%)
RABA1eNP_193578.1 Rab11_like 11..175 CDD:206660 80/163 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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