DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and rab4b

DIOPT Version :10

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:XP_031746337.1 Gene:rab4b / 549741 XenbaseID:XB-GENE-946075 Length:234 Species:Xenopus tropicalis


Alignment Length:210 Identity:163/210 - (77%)
Similarity:187/210 - (89%) Gaps:6/210 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 DYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTAGQERF 70
            |:|||||:|||||:|||||||.|||:|||.||:||||||||||||||||||||||||||||||||
 Frog    27 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRIVNVGGKSVKLQIWDTAGQERF 91

  Fly    71 RSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNKKDLEEARDVTFLE 135
            |||||||||||||||||||..||:::|||||||.||||||||||:|:|.||||||:..|:|||||
 Frog    92 RSVTRSYYRGAAGALLVYDIASRETYNALTNWLTDARTLASPNIIIILCGNKKDLDADREVTFLE 156

  Fly   136 ASTFAQENELIFLETSAKTGENVEEAFLKCSKTILAKIETGELDPERIGSGIQYGGAALRNLQ-- 198
            ||.|||||||:||||||.||||||||||||::|||:|||:|||||||:.||||||.|:.|:.:  
 Frog   157 ASRFAQENELMFLETSALTGENVEEAFLKCARTILSKIESGELDPERMWSGIQYGDASPRHAKHS 221

  Fly   199 --TRQRSINKPDCTC 211
              |:|:  |:..|.|
 Frog   222 HGTQQQ--NRQQCNC 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 135/159 (85%)
rab4bXP_031746337.1 Rab4 30..190 CDD:206696 135/159 (85%)

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