DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab4 and rab7b

DIOPT Version :10

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001002178.1 Gene:rab7b / 431725 ZFINID:ZDB-GENE-180906-1 Length:204 Species:Danio rerio


Alignment Length:217 Identity:76/217 - (35%)
Similarity:116/217 - (53%) Gaps:19/217 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSETYDYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTA 65
            |:.....|.|.:|:|.:|.||:.|::.::.:||.:....|||.:|.::.|.|..:.|.:||||||
Zfish     1 MASRKKVLLKVIILGDSGVGKTSLMNQYVNNKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTA 65

  Fly    66 GQERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNW----LNDARTLASPNIVILLVGNKKDLE 126
            |||||:|:..::||||...:||||.|:..:|..|.:|    |..|.|....|...:::|||.||:
Zfish    66 GQERFQSLGVAFYRGADCCVLVYDVTAPTTFKTLDSWRDEFLIQASTSDPENFPFVVLGNKIDLD 130

  Fly   127 EARDVTFLEASTFAQ-ENELIFLETSAKTGENVEEAFLKCSKTILAKIETGELD-PERIGSGIQY 189
            . |.|:...|..:.| :|.:.:.|||||...|||:||...::..|.:....:.| |:.|..|   
Zfish   131 N-RQVSTKRAQAWCQSKNNIPYFETSAKEAINVEQAFQTIARNALKQESVDKYDFPDEIKLG--- 191

  Fly   190 GGAALRNLQTRQRSINKPDCTC 211
                    ..|..| |...|:|
Zfish   192 --------NDRPMS-NGEGCSC 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 64/164 (39%)
rab7bNP_001002178.1 Rab7 9..178 CDD:206655 65/169 (38%)

Return to query results.
Submit another query.