DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and rab5b

DIOPT Version :10

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_998050.1 Gene:rab5b / 405821 ZFINID:ZDB-GENE-040426-2593 Length:214 Species:Danio rerio


Alignment Length:167 Identity:72/167 - (43%)
Similarity:105/167 - (62%) Gaps:1/167 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTAGQERFRSV 73
            ||.:::|....|||.|:..|::.:|.:....|||..|.::.|.:...:||.:|||||||||:.|:
Zfish    21 FKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQSVCLDDTTVKFEIWDTAGQERYHSL 85

  Fly    74 TRSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNKKDLEEARDVTFLEAST 138
            ...|||||..|::|:|.|..::|.....|:.:.:..|||||||.|.|||.||.:.|.|.:.||.|
Zfish    86 APMYYRGAQAAIVVFDITKPETFERAKAWVKELQRQASPNIVIALAGNKADLADKRLVEYEEAQT 150

  Fly   139 FAQENELIFLETSAKTGENVEEAFLKCSKTILAKIET 175
            :|::..|:|:||||||..||.|.||..:|. :.|.:|
Zfish   151 YAEDTGLLFMETSAKTAMNVNELFLAIAKK-MPKTDT 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 70/159 (44%)
rab5bNP_998050.1 Rab5_related 20..182 CDD:206653 70/161 (43%)

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