DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and RabX5

DIOPT Version :9

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_647644.2 Gene:RabX5 / 38209 FlyBaseID:FBgn0035255 Length:277 Species:Drosophila melanogaster


Alignment Length:212 Identity:65/212 - (30%)
Similarity:106/212 - (50%) Gaps:10/212 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTAGQERFRSVT 74
            |.:.:|....||:.:::.|...||:.:...||||:|.....::.|.:..|::||||||||||.:.
  Fly    66 KVIFVGDCSVGKTAIVNRFCYDKFQSNYKATIGVDFELENFSILGHNYSLEMWDTAGQERFRCIA 130

  Fly    75 RSYYRGAAGALLVYDATSRDSFNALTNWLNDARTL-ASPNIVILLVGNKKDLEEARDVTFLE--A 136
            .:|||.|:..::.||.:.:||..:...|||.|... ||...::.|||.|.||....:...:|  |
  Fly   131 GAYYRNASVIVVTYDMSKKDSLESAKKWLNSALNYNASKRPLVFLVGTKADLLSKEEFVRMERLA 195

  Fly   137 STFAQENELIFLETSAKTGENVEEAF-----LKCSKTILAKIETGELDPER--IGSGIQYGGAAL 194
            ...|.|.:..:...||::|..|.|.|     |...:.::.:|.:.:..|:.  ..:.::.....|
  Fly   196 GLAAAELQAEYWSVSARSGFKVTELFQRIAALAFEEAVMQEIRSIKNKPQEQATQASVKSQTFDL 260

  Fly   195 RNLQTRQRSINKPDCTC 211
            ||....:.|..|..|||
  Fly   261 RNFFGSRLSQQKSGCTC 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 55/166 (33%)
RabX5NP_647644.2 P-loop_NTPase 66..230 CDD:304359 55/163 (34%)
RAB 66..225 CDD:197555 54/158 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454578
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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