DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab4 and Rab9Db

DIOPT Version :9

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_572642.1 Gene:Rab9Db / 31993 FlyBaseID:FBgn0030221 Length:197 Species:Drosophila melanogaster


Alignment Length:170 Identity:64/170 - (37%)
Similarity:92/170 - (54%) Gaps:15/170 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSETYDYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIG-------VEFGS-RIVNVGGKSV 57
            ||: ||..||.:|:|.:|.||:|||..|.:::|.:....|:|       |||.. |:..:     
  Fly     1 MSQ-YDNPFKIIILGDSGVGKTCLLMRFSDNQFTERHRVTVGMDRRECSVEFADWRMGRM----- 59

  Fly    58 KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNK 122
             ||:|||:..|||:.:..:..|.|.|.|||||.||..||..:..|:.:.|.|....:.:||||||
  Fly    60 -LQVWDTSDDERFKLLKATQCRSAHGILLVYDITSSKSFQNIDGWMKEIRRLCPDKVTVLLVGNK 123

  Fly   123 KDLEEARDVTFLEASTFAQENELIFLETSAKTGENVEEAF 162
            .|....|.|:..:...:|....:.|.|.|||:|.||.:.|
  Fly   124 SDDPNHRQVSMAQGFNYAHRQSICFEEVSAKSGRNVYDIF 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 60/162 (37%)
Rab9DbNP_572642.1 RAB 8..171 CDD:197555 60/162 (37%)
Rab 8..167 CDD:206640 60/162 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454397
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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