DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab4 and Rab4b

DIOPT Version :9

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_083667.1 Gene:Rab4b / 19342 MGIID:105071 Length:213 Species:Mus musculus


Alignment Length:213 Identity:164/213 - (76%)
Similarity:187/213 - (87%) Gaps:2/213 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSETYDYLFKFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTA 65
            |:||||:|||||:|||||:|||||||.|||:|||.||:||||||||||:||||||:|||||||||
Mouse     1 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 65

  Fly    66 GQERFRSVTRSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNKKDLEEARD 130
            ||||||||||||||||||||||||.|||:::|:|..||.|||||||||||::|.||||||:..|:
Mouse    66 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE 130

  Fly   131 VTFLEASTFAQENELIFLETSAKTGENVEEAFLKCSKTILAKIETGELDPERIGSGIQYGGAALR 195
            |||||||.|||||||:||||||.||||||||||||::|||.||::|||||||:|||||||..:||
Mouse   131 VTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELDPERMGSGIQYGDISLR 195

  Fly   196 NL-QTRQRSINKPD-CTC 211
            .| |.|......|. |.|
Mouse   196 QLRQPRSAQAVAPQPCGC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 131/159 (82%)
Rab4bNP_083667.1 Rab4 9..169 CDD:206696 131/159 (82%)
Effector region. /evidence=ECO:0000250 37..45 6/7 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847827
Domainoid 1 1.000 274 1.000 Domainoid score I1759
eggNOG 1 0.900 - - E2759_KOG0086
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H100632
Inparanoid 1 1.050 331 1.000 Inparanoid score I2420
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1146851at2759
OrthoFinder 1 1.000 - - FOG0001311
OrthoInspector 1 1.000 - - otm44223
orthoMCL 1 0.900 - - OOG6_102241
Panther 1 1.100 - - LDO PTHR47979
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1999
SonicParanoid 1 1.000 - - X808
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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