DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab4 and RabX1

DIOPT Version :10

Sequence 1:NP_523777.1 Gene:Rab4 / 36992 FlyBaseID:FBgn0016701 Length:213 Species:Drosophila melanogaster
Sequence 2:XP_316217.3 Gene:RabX1 / 1276825 VectorBaseID:AGAMI1_002888 Length:242 Species:Anopheles gambiae


Alignment Length:179 Identity:63/179 - (35%)
Similarity:102/179 - (56%) Gaps:6/179 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 KFLIIGSAGSGKSCLLHHFIESKFKDDSSHTIGVEFGSRIVNVGGKSVKLQIWDTAGQERFRSVT 74
            |.:::||.|.||:.|:..::.:.:..:.|.|||..|.:..||:....||:|:|||||||||:::.
Mosquito     7 KIVVLGSQGVGKTSLVVRYVSNVYTKEISPTIGASFFTCKVNLEDFKVKMQVWDTAGQERFKAMA 71

  Fly    75 RSYYRGAAGALLVYDATSRDSFNALTNWLNDARTLASPNIVILLVGNKKDLEEARDVTFLEASTF 139
            ..|||.|..||||:|.|..:|||.:..|:.:.:......:|:.|||||.|||..|.|:..||..:
Mosquito    72 PLYYRNANAALLVFDLTQYNSFNEIKGWVQELQRNVQEPMVLSLVGNKLDLEAKRAVSREEAMLY 136

  Fly   140 AQENELIFLETSAKTGENVEEAFLKCSKTILAKIETGELDPERIGSGIQ 188
            |......:.||||...:.:|:.|:..:..::      :|..|.:.|.::
Mosquito   137 ANSIGGNYFETSALHDQGIEQVFISIAVGLI------KLSGEDVCSSLK 179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab4NP_523777.1 Rab4 9..169 CDD:206696 60/158 (38%)
RabX1XP_316217.3 Rab 7..163 CDD:206640 60/155 (39%)

Return to query results.
Submit another query.