DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment POSH and sorbs3

DIOPT Version :9

Sequence 1:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster
Sequence 2:XP_005162522.1 Gene:sorbs3 / 541478 ZFINID:ZDB-GENE-050327-1 Length:695 Species:Danio rerio


Alignment Length:457 Identity:125/457 - (27%)
Similarity:193/457 - (42%) Gaps:98/457 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 KQNAAAGKGEEKGEET-----ETQPERAKPQPPAESVAPP-DNQLLQLQSHQQSHQ--PARHKQR 133
            ||....|:||.|....     |.:.|.:.|..|..:|... .:..:....|..|..  |.:.::|
Zfish   282 KQYQRPGRGEVKANAPATRTGEKRQENSSPIIPCSAVKQGITSSFMHADDHISSKMDFPPKKEER 346

  Fly   134 RFLLPHAYALFDFASGEATDLKFKKGDLILIKHRIDNNWFVGQANGQEGTFPINYVKVSVPLPMP 198
            :  :..|.|.|:|.:....:|..:|||::.|..:||.||:.|:.:|:.|.||.:||::..|...|
Zfish   347 K--MKAARAKFNFQAQSPKELTIQKGDVVYIHRQIDANWYEGEHHGRVGIFPTSYVEIIPPTEKP 409

  Fly   199 --------------QCIAMYDFKMGPNDEEGCLEFKKSTVIQVMRRVDHNWAEGRIGQTI--GIF 247
                          :..|:|.|......|   |.|:|..||.:.||||.:|.||||..|.  |||
Zfish   410 TPIKSPTIQVLEYGEAAALYTFNADLPVE---LSFRKGEVISITRRVDDHWLEGRIAGTTRSGIF 471

  Fly   248 PIAFVELNAAAKKLLDSGLHTHPFCHP-PKQQGQRALPPVPVI----DPTVVTESSSGSSNS--- 304
            ||::|::|...:........:.|...| |...|:....|:..:    :|.:.....|..|.|   
Zfish   472 PISYVQVNKMPRTKSSDDFPSSPTLTPEPLSPGRPQHSPLSPLSRSPEPQLSHHKQSSQSRSPLS 536

  Fly   305 ----------------TPGSSNSSSTSSSNNCSPNHQISLPNTPQHVVASGSASVRFRDKGAKEK 353
                            :||.::|:|.:|... ...|..:.|.|......|.|:            
Zfish   537 HAQATSPKQPTNHFLFSPGPTSSTSPTSKRT-GLMHLHNTPETDSRSPVSPSS------------ 588

  Fly   354 RHSLNALLGGGAPLSLLQTNRHSAEILSLPHELSRLEVSSSTALKPTSAPQTSRVLKTTVQQQ-- 416
             |.|.:|.|.|.|.      :|::     |:      ::...|...:|.|.|  |:.:|.|..  
Zfish   589 -HVLQSLQGPGLPA------KHAS-----PY------ITQDVARTQSSQPNT--VISSTSQSPAN 633

  Fly   417 ----MQPNLPWGYLALFPYKPRQTDELELKKGCVYIVTERCVDGWFKG-KNWLDITGVFPGNYLT 476
                .||     |.|::.|||:..|||||::|.:..|.|:|.||||.| ....:..|.|||||:.
Zfish   634 MGHLRQP-----YKAVYNYKPQNRDELELREGDIVQVLEKCDDGWFVGTSERTEAFGTFPGNYVA 693

  Fly   477 PL 478
            |:
Zfish   694 PV 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POSHNP_523776.1 RING 11..53 CDD:238093
SH3 139..191 CDD:302595 20/51 (39%)
SH3_SH3RF_2 199..251 CDD:212721 24/53 (45%)
SH3_SH3RF_3 424..477 CDD:212717 25/53 (47%)
SH3_SH3RF_C 782..836 CDD:212719
sorbs3XP_005162522.1 Sorb 117..165 CDD:295396
SH3_Vinexin_1 349..403 CDD:212854 20/53 (38%)
SH3_Sorbs_2 424..478 CDD:212716 25/56 (45%)
NCOA_u2 473..585 CDD:293270 20/112 (18%)
SH3_Vinexin_3 638..695 CDD:212851 27/61 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
21.870

Return to query results.
Submit another query.