DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment POSH and CAP

DIOPT Version :10

Sequence 1:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster
Sequence 2:NP_001369075.1 Gene:CAP / 36084 FlyBaseID:FBgn0033504 Length:2568 Species:Drosophila melanogaster


Alignment Length:348 Identity:95/348 - (27%)
Similarity:134/348 - (38%) Gaps:110/348 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 AYALFDFASGEATDLKFKKGDLILIKHRIDNNWFVGQANGQEGTFPINYVKV------SVPLPMP 198
            |.|||:|....:.:|.|:|||.|.|:.:||.||:.|:.|...|..|.:||::      ..|...|
  Fly  2316 ARALFNFQGQTSKELSFRKGDTIYIRRQIDANWYEGEHNAMIGLLPASYVEIVSRDGARTPSKRP 2380

  Fly   199 ---QCIAMYDFKMGPNDEEGCLEFKKSTVIQVMRRVDHNWAEGRIGQTIGIFPIAFVELNAAAKK 260
               |..|.|:|:.....|   |...|..::.:.||||.||.||:|....||||.::||:      
  Fly  2381 SEGQARAKYNFQAQSGIE---LSLNKGELVTLTRRVDGNWFEGKIANRKGIFPCSYVEV------ 2436

  Fly   261 LLDSGLHTHPFCHPPKQQGQRALPPVPVIDPTVVTESSSGSSNSTPGSSNSSSTSSSNNCSPNHQ 325
            |.|.|..                 .:.....||:|                  :.|:.|..||..
  Fly  2437 LTDIGAE-----------------DIAARTTTVIT------------------SQSTTNLRPNLD 2466

  Fly   326 ISLPNTPQHVVASGSASVRFRDKGAKEKRHSLNALLGGGA--PLSLLQTNRHSAEILSLPHELSR 388
            :...|.                      .:..|.|...||  |..:|:..|       ..|:...
  Fly  2467 VLRTNI----------------------NNEFNTLTQNGAQPPNGILKETR-------TLHKTDA 2502

  Fly   389 LEVSSSTALKPTSAPQTSRVLKTTVQQQMQPNLPWGYLALFPYKPRQTDELELKKGCVYIVTERC 453
            |.|.:|:.                         |..|.||:.|:|:.:|||||.:|.|..|.|:|
  Fly  2503 LHVDTSSE-------------------------PLAYRALYKYRPQNSDELELLEGDVVHVLEKC 2542

  Fly   454 VDGWFKGKNW-LDITGVFPGNYL 475
            .||||.|.:. ....|.|||||:
  Fly  2543 DDGWFVGTSQRTGCFGTFPGNYV 2565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POSHNP_523776.1 RAD18 6..>113 CDD:227719
RING-HC_SH3RF3 8..53 CDD:438408
SH3 139..191 CDD:473055 22/50 (44%)
SH3_SH3RF_2 199..251 CDD:212721 20/51 (39%)
SH3_SH3RF_3 424..477 CDD:212717 26/53 (49%)
SH3_SH3RF_C 782..836 CDD:212719
CAPNP_001369075.1 Sorb 1959..2003 CDD:470634
SH3_Sorbs_1 2315..2367 CDD:212715 22/50 (44%)
SH3_Sorbs_2 2384..2436 CDD:212716 21/54 (39%)
SH3_Sorbs_3 2514..2567 CDD:212714 26/52 (50%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.