DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment POSH and sorb-1

DIOPT Version :9

Sequence 1:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster
Sequence 2:NP_001360603.1 Gene:sorb-1 / 3565590 WormBaseID:WBGene00012891 Length:1007 Species:Caenorhabditis elegans


Alignment Length:449 Identity:109/449 - (24%)
Similarity:181/449 - (40%) Gaps:103/449 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 RILEGMKQNAAAGKGEEKGEETETQPERAKPQPPAESVAPP-DNQLLQLQS-----HQQSHQPAR 129
            |:.:..::.....|.|:..||...:.||.....|  |.||. .|.:.:|.|     .....:||.
 Worm   615 RVKQSNEEELLRLKAEKLAEELRKEKERKHSFIP--SSAPSLQNNMDRLNSLLYDFSSDIQEPAH 677

  Fly   130 HKQRRFLLPHAYALFDFASGEATDLKFKKGDLILIKHRIDNNWFVGQANGQEGTFPINYVKVSV- 193
            .......:..|.|::.|....|.:|...:||:|.|...:|..|..|:.||:.|.||.:||:::. 
 Worm   678 RDYTPQPVMTATAVYKFEPRSARELPLNRGDIIRIIREVDGYWMEGERNGRSGIFPTSYVQINTG 742

  Fly   194 -PLPMPQCIAMYDFKMGPNDEEGCLEFKKSTVIQVMRRVDHNWAEG--RIGQTIGIFPIAFVELN 255
             .....:..|:|.|....:.|   |..|:..:|...|::|.||.||  :|| .:||||.::||  
 Worm   743 NQGDSQKMRAIYPFTARSDTE---LSLKRGEIITRRRQIDSNWLEGSNQIG-IVGIFPASYVE-- 801

  Fly   256 AAAKKLLDSGLHTHPFCHPPKQQGQRALPPV-------PVID-----------PTVVTESSSG-- 300
                               |.:|.::.:|.:       |.|:           .||:.:|:.|  
 Worm   802 -------------------PIEQVEQHIPTIVPNRPKTPKIEDQVYNQVYKPNETVIMQSNQGYY 847

  Fly   301 -SSNSTPG--------SSNSSSTSSSNNCSPNHQISLPNTPQHVVASGSASVRFRDKGAKEKRHS 356
             .:...|.        |.:.|:...|.:.:| ||...|  |.|...|......:   |.|:..:.
 Worm   848 DKAAVVPNNKVRFDLPSGSDSNLQISRSLNP-HQNQFP--PTHTQTSTQQPSNY---GMKKIEYE 906

  Fly   357 LNALLGGGAPLSLLQTNRHSAEILSLPHELSRLEVSSSTALKPTSAPQTSRVLKTTVQQQMQPNL 421
            ...::....|:.:.|..:.:.|                    |.:..:.:.:|......     :
 Worm   907 REKVVEEVPPMHMDQYRKLNDE--------------------PKNPKKDTNILMNAASL-----I 946

  Fly   422 PWG---YLALFPYKPRQTDELELKKGCVYIVTERCVDGWFKGKNWL--DITGVFPGNYL 475
            |.|   |.|::||:|::.|||:|....:..|.|:|.||||.|.:..  |. |:|||||:
 Worm   947 PKGSEMYRAVYPYQPQKEDELQLYTNDIIFVVEKCDDGWFIGTSLRTGDF-GIFPGNYV 1004

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POSHNP_523776.1 RING 11..53 CDD:238093
SH3 139..191 CDD:302595 19/51 (37%)
SH3_SH3RF_2 199..251 CDD:212721 19/53 (36%)
SH3_SH3RF_3 424..477 CDD:212717 25/57 (44%)
SH3_SH3RF_C 782..836 CDD:212719
sorb-1NP_001360603.1 Sorb 505..553 CDD:383053
SH3_Sorbs_1 687..739 CDD:212715 19/51 (37%)
SH3_Sorbs_1 749..802 CDD:212715 21/77 (27%)
SH3_Sorbs_3 952..1006 CDD:212714 24/54 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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