DRSC/TRiP Functional Genomics Resources

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Protein Alignment POSH and lsb1

DIOPT Version :10

Sequence 1:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster
Sequence 2:NP_595286.1 Gene:lsb1 / 2539945 PomBaseID:SPBC119.05C Length:296 Species:Schizosaccharomyces pombe


Alignment Length:142 Identity:38/142 - (26%)
Similarity:59/142 - (41%) Gaps:35/142 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 AAAGKGEEKGEETETQPERAKPQPPA--------------ESVAPPDNQLLQLQSHQQSHQPARH 130
            ||....:..||:...:..|..|..||              |.:.||.:......:|:.       
pombe    84 AAMSLSQNSGEKRTPEEPRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGPNTAHKN------- 141

  Fly   131 KQRRFLLPHAYALFDFASGEATDLKFKKGDLILIKHRIDNNWFVGQANGQEGTFPINY------- 188
                  :....|::||...:|.||.|..|::|::...::|:|:.|:.||:||.||.||       
pombe   142 ------VERVLAMYDFPGPDAGDLGFHAGEVIIVLEHVNNDWWRGELNGKEGIFPSNYVRLLEDS 200

  Fly   189 -VKVSVPLPMPQ 199
             ||...|.|.||
pombe   201 AVKAQPPPPPPQ 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POSHNP_523776.1 RAD18 6..>113 CDD:227719 11/46 (24%)
RING-HC_SH3RF3 8..53 CDD:438408
SH3 139..191 CDD:473055 21/59 (36%)
SH3_SH3RF_2 199..251 CDD:212721 1/1 (100%)
SH3_SH3RF_3 424..477 CDD:212717
SH3_SH3RF_C 782..836 CDD:212719
lsb1NP_595286.1 SH3 142..195 CDD:214620 20/52 (38%)
Blue background indicates that the domain is not in the aligned region.

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