DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment POSH and Sorbs2

DIOPT Version :9

Sequence 1:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster
Sequence 2:XP_011240500.1 Gene:Sorbs2 / 234214 MGIID:1924574 Length:1501 Species:Mus musculus


Alignment Length:521 Identity:123/521 - (23%)
Similarity:174/521 - (33%) Gaps:194/521 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 KVL-PCQHTFCRKCLQDIVASQHKLRCPEC-RILVSCKIDELPPNVLLMRILEGMKQNAAAGKGE 86
            |:| |.:.|...||...:|.:........| :|....:...||.|.:|.|::..:..........
Mouse  1109 KILTPQKQTEKAKCKASVVEALDSALKDICDQIKAEKRRGSLPDNSILHRLISELLPQIPERNSS 1173

  Fly    87 EKGEETETQPERAKPQPP----------------AESVAPPD------------NQLLQLQSHQQ 123
            ....:.....:...|.||                ..|.:.||            ...|.||.|:.
Mouse  1174 LHALKRSPMHQPFHPLPPDGASHCPLYQNDCGRMPHSASFPDVDTTSNYHAQDYGSALSLQDHES 1238

  Fly   124 ---------------SHQPARHKQRRFLLPHAYALFDFASGEATDLKFKKGDLILIKHRIDNNWF 173
                           |.:.....::...|| |.|::||.:..:.:|.|||||.:.|..:||.||:
Mouse  1239 PRSYSSTLTDLGRSASRERRGTPEKEVKLP-AKAVYDFKAQTSKELSFKKGDTVYILRKIDQNWY 1302

  Fly   174 VGQANGQEGTFPINYVKVSVP-------LPMP--------QCIAMYDFKMGPNDEEGCLEFKKST 223
            .|:.:|:.|.|||:||:...|       .|.|        :.||.|:|....|.|   |..:|..
Mouse  1303 EGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPVQPGEIGEAIAKYNFNADTNVE---LSLRKGD 1364

  Fly   224 VIQVMRRVDHNWAEGRIGQT--IGIFPIAFVEL---NAAAKKLLDSGLHTHPFCHPPKQQGQRAL 283
            .|.:::|||.||.||:|..|  .||||:::||:   ||       .|...:|.            
Mouse  1365 RIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRNA-------KGAEDYPD------------ 1410

  Fly   284 PPVPVIDPTVVTESSSGSSNSTPGSSNSSSTSSSNNCSPNHQISLPNTPQHVVASGSASVRFRDK 348
            ||:|                 ...||:...|.|||.         |..|                
Mouse  1411 PPLP-----------------HSYSSDRIYTLSSNK---------PQRP---------------- 1433

  Fly   349 GAKEKRHSLNALLGGGAPLSLLQTNRHSAEILSLPHELSRLEVSSSTALKPTSAPQTSRVLKTTV 413
                 ..|...:.|||.|                                               
Mouse  1434 -----GFSHENIQGGGEP----------------------------------------------- 1446

  Fly   414 QQQMQPNLPWGYLALFPYKPRQTDELELKKGCVYIVTERCVDGWFKG-KNWLDITGVFPGNYLTP 477
                       :.||:.|.||..|||||::..|..|.|:|.||||.| .......|.|||||:..
Mouse  1447 -----------FQALYNYTPRNEDELELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFPGNYVKR 1500

  Fly   478 L 478
            |
Mouse  1501 L 1501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
POSHNP_523776.1 RING 11..53 CDD:238093 8/30 (27%)
SH3 139..191 CDD:302595 23/51 (45%)
SH3_SH3RF_2 199..251 CDD:212721 22/53 (42%)
SH3_SH3RF_3 424..477 CDD:212717 25/53 (47%)
SH3_SH3RF_C 782..836 CDD:212719
Sorbs2XP_011240500.1 Sorb 372..422 CDD:128735
SH3_Sorbs2_1 1267..1321 CDD:212853 25/54 (46%)
SH3_Sorbs2_2 1342..1398 CDD:212856 24/58 (41%)
SH3_Sorbs2_3 1441..1501 CDD:212850 29/117 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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