DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns2 and lsg1

DIOPT Version :10

Sequence 1:NP_611232.1 Gene:Ns2 / 36989 FlyBaseID:FBgn0034243 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_997807.1 Gene:lsg1 / 323464 ZFINID:ZDB-GENE-030131-2184 Length:640 Species:Danio rerio


Alignment Length:565 Identity:129/565 - (22%)
Similarity:207/565 - (36%) Gaps:175/565 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 KAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSR--------------VISQTALQKFQD 104
            |.|....|..|..|..:.||.||...|...|  |...|.              |..|::|..|..
Zfish     3 KKKTRGEGSGLGRALIKERLNAGRGYRRNDT--WLHTSELNDGYDWGRLNLQSVTEQSSLDDFLA 65

  Fly   105 EIGKA----VKDPYQVIMKPSQLPVTLLN--EAAKYKRVHLLDTESFDSTFGPKKQRKRVSLKVR 163
            ....|    |.:...:...|::....||:  |:.:.|::|           ...||..|:..:..
Zfish    66 TAELAGTEFVAEKLNIKFVPAEARAGLLSSEESRRLKKLH-----------EENKQLLRIPRRPP 119

  Fly   164 DLEDLSKAADDQADKYDS----AKDLDLIREDTGEKKAV-----RDWVFGAGQSKRIWNELHKVV 219
            ..|..|.....|.:| ||    .:||..:.|   |:|.:     |:..|        |.:|.:|:
Zfish   120 WDESTSPEVLQQTEK-DSFLTWRRDLARLEE---EQKLILTPFERNLDF--------WRQLWRVI 172

  Fly   220 DASDVLLQVLDARDPMGTRSKYIEEFLRKEKPHKHLFFILNKVDLVP-----VWVT--QR----- 272
            :.|||::|::|||:|:..|...:|:::::...||....:|||.||:.     .|..  |:     
Zfish   173 ERSDVVVQIVDARNPLLFRCPDLEKYVKEVSVHKVNMLLLNKADLLTREQRRAWARYFQKEGIRA 237

  Fly   273 --WVAILSA---------------------EYPTIAFHASLQHP--------------------- 293
              |.|:..|                     |..|.:.:|:..|.                     
Zfish   238 VFWSALAEAQRLEAEERGEDAMDQEDQSDTEEETASKNATDHHEENSSSPNEEKDENEQDEEEEG 302

  Fly   294 -------------------------------------------FGKGALINLFRQL--GKLHLDK 313
                                                       ..|..|:.:|:.:  |....| 
Zfish   303 EDERICVDESEWQTCSEESGDEDHAEENPESTATSSFYNSSRLLRKNELLEMFKSVHSGPTCKD- 366

  Fly   314 KQISVGFIGYPNVGKSSVINAL-RSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPT-AE 376
            .||:||.:|||||||||.||.: |:||| .|:...|.||.:|.:.:...:.|.||||:|.|: ..
Zfish   367 GQITVGLVGYPNVGKSSTINTIFRNKKV-SVSATPGHTKHFQTLFVEPGLCLCDCPGLVMPSFVS 430

  Fly   377 TDTEKVLKGVVRVELVTNPEDYVDSLLKRVRPEYISKNYKI-----------EHWNTSTHFLEQL 430
            |..|.:..|::.::.:.:....:..:.:.:....:...|.|           :...|....|...
Zfish   431 TKAEMICSGILPIDQMRDHVPAISLVCQNIPRNVLEGTYGINIIRPREDEDPDRPPTYEELLMAY 495

  Fly   431 AQKTGKLLKGGEPDVTVTARMVLNDWQRGKL-----PFYVPPEGF 470
            ....|.:...|:||.:.:||.||.|:..|||     |.::.||.|
Zfish   496 GYMRGFMTAHGQPDQSRSARYVLKDYVSGKLLYCHPPPHINPEDF 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns2NP_611232.1 NGP1NT 49..179 CDD:462379 31/144 (22%)
NGP_1 214..370 CDD:206751 61/257 (24%)
PTZ00121 <474..657 CDD:173412
lsg1NP_997807.1 HSR1_MMR1 164..426 CDD:206750 65/271 (24%)
RbgA 176..526 CDD:440775 78/351 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 251..341 4/89 (4%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 602..640
Blue background indicates that the domain is not in the aligned region.

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