DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns2 and Gnl3

DIOPT Version :10

Sequence 1:NP_611232.1 Gene:Ns2 / 36989 FlyBaseID:FBgn0034243 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_783170.1 Gene:Gnl3 / 290556 RGDID:631354 Length:538 Species:Rattus norvegicus


Alignment Length:625 Identity:152/625 - (24%)
Similarity:252/625 - (40%) Gaps:181/625 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 PRTKGTIKRLQMYRNFKAK---RDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTAL 99
            |:.|...||:..::.:|.:   |:...|:...|..:|          ...||             
  Rat     4 PKLKKASKRMTCHKRYKIQKKVREHHRKLRKEAKKRG----------HKKPK------------- 45

  Fly   100 QKFQDEIGKAVKDPYQVIMKPSQLPV--TLLNEA--AKYKRVHLLDTESFDSTFGPKKQRKRVSL 160
                       |||    ..|:..|.  .||.||  .|.:...|...:..|.   .|:|.::..|
  Rat    46 -----------KDP----GVPNSAPFKEALLREAELRKQQLEELKQQQKLDR---QKEQERKRKL 92

  Fly   161 KVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRDWVFGAGQSKRI-WNELHKVVDASDV 224
            ::        :.||:....::       :|::.|.| ::....|....|:: ..||.||::|||:
  Rat    93 EI--------SPDDEQSNVET-------QEESDEPK-IKKAKSGKQNPKKLHCQELKKVIEASDI 141

  Fly   225 LLQVLDARDPMGTRSKYIEEFLRKEKPHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHAS 289
            :|:|||||||:|.|...:||.: .:...|.|..:|||.||||....:.|:..|:.|.||:.|.||
  Rat   142 VLEVLDARDPLGCRCPQVEEAV-IQSGCKKLVLVLNKSDLVPKENLENWLTYLNKELPTVVFKAS 205

  Fly   290 --LQH------------PF------GKGALINL---FRQ-LGKLHLDKKQISVGFIGYPNVGKSS 330
              |::            ||      ||.||..|   |:| .|      |.:.||.:|:|||||||
  Rat   206 TNLKNRKKTFKIKKKVVPFQSKLCCGKEALWKLLGGFQQSCG------KGVQVGVVGFPNVGKSS 264

  Fly   331 VINALRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNP 395
            :||:|:.:::|.|....|.|:..|.:.|.|:|.:||.|..:.....:.....|:....:| |..|
  Rat   265 IINSLKQERICSVGVSMGLTRSMQIVPLDKQITIIDSPCFIISPCNSPAALALRSPASIE-VLRP 328

  Fly   396 EDYVDSLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTARMVLNDWQRGK 460
            .:...::|.:...:.:...|.:..:..|..|..:|||:.|...|||.|:|...|:::.::|....
  Rat   329 LEAASAILSQADSQQVVLKYTVPGYKDSLDFFTKLAQRRGLHQKGGSPNVESAAKLLWSEWTGAS 393

  Fly   461 LPFYVPP-------------------EGFAVPKSQEGKEEEV-VAEDPN---------------- 489
            |.:|..|                   .||.:.:.::.....: |.:.|:                
  Rat   394 LGYYCHPPASWNHSPHFNENITAIMKRGFNLEELEKNNAHSIQVLKGPHLTNKILFRSSGLTNGI 458

  Fly   490 ---EDAKSEAPTFVSESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAAK 551
               :|...|:|             ||.:|           |:|..|.:|:            ..:
  Rat   459 LEEKDIPEESP-------------KQTED-----------QQDGDDQEHV------------TGE 487

  Fly   552 KKARIHNLG--EEDEESSDG-------ADEFYSEDEYNED 582
            |.|.|.::.  ||..|.|.|       :|..:..|:.:|:
  Rat   488 KNAEISDVTPVEETREMSPGQSTASKPSDRSFILDKMSEE 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns2NP_611232.1 NGP1NT 49..179 CDD:462379 24/136 (18%)
NGP_1 214..370 CDD:206751 72/179 (40%)
PTZ00121 <474..657 CDD:173412 23/138 (17%)
Gnl3NP_783170.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..125 32/177 (18%)
Basic 2..46 11/75 (15%)
GN3L_Grn1 15..93 CDD:462569 21/118 (18%)
HSP90 <87..>158 CDD:481033 25/86 (29%)
Nucleostemin_like 140..302 CDD:206753 65/168 (39%)
Intermediate 277..451 36/174 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 460..538 21/104 (20%)
Acidic 460..532 21/104 (20%)

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