DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ns2 and Lsg1

DIOPT Version :10

Sequence 1:NP_611232.1 Gene:Ns2 / 36989 FlyBaseID:FBgn0034243 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001013439.1 Gene:Lsg1 / 288029 RGDID:1309089 Length:655 Species:Rattus norvegicus


Alignment Length:628 Identity:125/628 - (19%)
Similarity:216/628 - (34%) Gaps:196/628 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 RLP-AGTMARV------------EPTPKWFSNSR--------------VISQTALQKFQDEIGKA 109
            |.| .|::.||            ..|..|...|.              |..|::|:.|......|
  Rat     5 RAPGGGSLGRVLIRHQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEQSSLEDFLATAELA 69

  Fly   110 ----VKDPYQVIMKPSQLPVTLLN--EAAKYKRVHLLDTESFDSTFGPKKQRKRVSLKVRDLEDL 168
                |.:...:...|.:....||:  |:.:.||:|..:.:.......|...||      ...|:|
  Rat    70 GTEFVAEKLNIKFVPPEARTGLLSFEESQRIKRLHEENRQFLCIPRRPNWDRK------TSPEEL 128

  Fly   169 SKAADDQADKYDSAKDLDLIREDTGEKKAVRDWVFGAGQSKRIWNELHKVVDASDVLLQVLDARD 233
            .:|..|...|:..    .|:|.:..:|..:..:    .::...|.:|.:|::.||:::|::|||:
  Rat   129 KQAEKDNFLKWRR----QLVRLEEEQKLILTPF----ERNLDFWRQLWRVIERSDIVVQIVDARN 185

  Fly   234 PMGTRSKYIEEFLRKEKPHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASL-------- 290
            |:..|.:.:|.::::....|....::||.||:.......|......|...:.|.::|        
  Rat   186 PLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRVAWAVHFEKEGVKVIFWSALAETVHLNG 250

  Fly   291 ----------------------------------------------------------------- 290
                                                                             
  Rat   251 DSKDEVNSVAGEANSSESEDSSLDGNEIPHRDLFLLSEESESDDDDSEYEDCQEDEEEDWQTCSE 315

  Fly   291 ------------------------------------------QHPFGKGALINLFRQLGKLHLDK 313
                                                      .|...|..|:.||:   |||..|
  Rat   316 EDSNPEEGQEEGGCDRDQKEHGPEDSEAQSRASPENSQMSNKSHLVSKQELLELFK---KLHTGK 377

  Fly   314 K----QISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPT 374
            |    |::||.:|||||||||.||.:...|...|:...|.||.:|.:.:...:.|.||||:|.|:
  Rat   378 KVKDGQLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPS 442

  Fly   375 -AETDTEKVLKGVVRVELVTNPEDYVDSLLKRVRPEYISKNYKIE-----------HWNTSTHFL 427
             ..|..|.:..|::.::.:.:....|..:.:.:....:...|.|.           ...||...|
  Rat   443 FVSTKAEMICSGILPIDQMRDHVPPVSLVCQNIPRRVLEATYGINIIKPGEDEDPYRPPTSEELL 507

  Fly   428 EQLAQKTGKLLKGGEPDVTVTARMVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDA 492
            .......|.:...|:||...:||.:|.|:.||||.:..||.| ..|.:.:.:..:::    ....
  Rat   508 TAYGCMRGFMTAHGQPDQPRSARYILKDYVRGKLLYCHPPPG-KDPVAFQHQHRQLL----ENKI 567

  Fly   493 KSEAPTFVSESVKKAREFKQIQD--FRKIRVGLEYEQEDVKDL 533
            |.|.........:||::.:.:.|  |        :.||:|:.|
  Rat   568 KGEELRLQPGKTQKAKQVENVVDKTF--------FHQENVRAL 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns2NP_611232.1 NGP1NT 49..179 CDD:462379 28/139 (20%)
NGP_1 214..370 CDD:206751 54/274 (20%)
PTZ00121 <474..657 CDD:173412 10/62 (16%)
Lsg1NP_001013439.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 5/25 (20%)
HSR1_MMR1 163..441 CDD:206750 57/280 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..359 0/105 (0%)
RbgA <364..541 CDD:440775 54/179 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 625..655
Blue background indicates that the domain is not in the aligned region.

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