DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ns2 and Lsg1

DIOPT Version :10

Sequence 1:NP_611232.1 Gene:Ns2 / 36989 FlyBaseID:FBgn0034243 Length:674 Species:Drosophila melanogaster
Sequence 2:NP_001403957.1 Gene:Lsg1 / 224092 MGIID:107236 Length:650 Species:Mus musculus


Alignment Length:635 Identity:130/635 - (20%)
Similarity:218/635 - (34%) Gaps:215/635 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 RLP-AGTMARV------------EPTPKWFSNSR--------------VISQTALQKFQDEIGKA 109
            |.| .|::.||            ..|..|...|.              |..|::|:.|......|
Mouse     5 RAPGGGSLGRVLIRQQTQRSRSHRHTDSWLHTSELNDGYDWGRLNLQSVTEQSSLEDFLATAELA 69

  Fly   110 ----VKDPYQVIMKPSQLPVTLLN--EAAKYKRVH------LLDTESFDSTFGPKKQRKRVSLKV 162
                |.:...:...|.:....||:  |:.:.|::|      |....||...|.|...||      
Mouse    70 GTEFVAEKLNIKFVPPEARTGLLSFEESQRIKKLHEENRQFLCIPRSFYDCFRPNWDRK------ 128

  Fly   163 RDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRDWVFGAGQSKRIWNELHKVVDASDVLLQ 227
            ...|:|.:|..|...|:..    .|:|.:..:|..:..:    .::...|.:|.:|::.||:::|
Mouse   129 TSPEELKQAEKDNFLKWRR----QLVRLEEEQKLILTPF----ERNLDFWRQLWRVIERSDIVVQ 185

  Fly   228 VLDARDPMGTRSKYIEEFLRKEKPHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASL-- 290
            ::|||:|:..|.:.:|.::::....|....::||.||:.......|......|...:.|.::|  
Mouse   186 IVDARNPLLFRCEDLECYVKEIDAAKENVILINKADLLTAEQRFAWAVHFEKEGVKVIFWSALAE 250

  Fly   291 -QHPFG----------------------------------------------------------- 295
             .|..|                                                           
Mouse   251 TDHLNGDLKEEVDSVAGDTNKTESESSSLDANEIPHRDLISLSEESASDSGDSKYEDCQEDEEED 315

  Fly   296 ------------------------------------------KGALINLFRQLGKLHLDKK---- 314
                                                      |..|:.||:   |||..||    
Mouse   316 WQTCSEEDSVPEEEEGCNADSETQNRKNAENQQVNNDSYLVSKQELLELFK---KLHTGKKVKDG 377

  Fly   315 QISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGETKVWQYITLMKRIFLIDCPGVVYPT-AETD 378
            |::||.:|||||||||.||.:...|...|:...|.||.:|.:.:...:.|.||||:|.|: ..|.
Mouse   378 QLTVGLVGYPNVGKSSTINTIMGNKKVSVSATPGHTKHFQTLYVEPGLCLCDCPGLVMPSFVSTK 442

  Fly   379 TEKVLKGVVRVELVTNPEDYVDSLLKRVRPEYISKNYKIE-----------HWNTSTHFLEQLAQ 432
            .|.:..|::.::.:.:....|..:.:.:....:...|.|.           ...||...|.....
Mouse   443 AEMICNGILPIDQMRDHVPPVSLVCQNIPRRVLEVTYGINIIKPREDEDPYRPPTSEELLTAYGC 507

  Fly   433 KTGKLLKGGEPDVTVTARMVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAP 497
            ..|.:...|:||...:||.:|.|:..|||.:..||.|          ::.|..:..::.      
Mouse   508 MRGFMTAHGQPDQPRSARYILKDYVGGKLLYCHPPPG----------KDPVAFQHQHQQ------ 556

  Fly   498 TFVSESVK---------KAREFKQIQD-----FRKIRVGLEYEQEDVKDL 533
             .:...||         |.|:.|||::     |        :.||:|:.|
Mouse   557 -LLESKVKGGELRLQPGKGRKAKQIENVVDKTF--------FHQENVRAL 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ns2NP_611232.1 NGP1NT 49..179 CDD:462379 31/145 (21%)
NGP_1 214..370 CDD:206751 55/263 (21%)
PTZ00121 <474..657 CDD:173412 13/74 (18%)
Lsg1NP_001403957.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 5/25 (20%)
HSR1_MMR1 169..436 CDD:206750 58/269 (22%)
RbgA 181..536 CDD:440775 73/357 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..351 0/91 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 624..650
Blue background indicates that the domain is not in the aligned region.

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