DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3b and eif3b

DIOPT Version :9

Sequence 1:NP_611228.1 Gene:eIF3b / 36981 FlyBaseID:FBgn0034237 Length:690 Species:Drosophila melanogaster
Sequence 2:NP_001016724.1 Gene:eif3b / 549478 XenbaseID:XB-GENE-963850 Length:676 Species:Xenopus tropicalis


Alignment Length:692 Identity:356/692 - (51%)
Similarity:474/692 - (68%) Gaps:26/692 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 EEHSGTDANDSDYQEEPNFDDPPGFVDNISDEDLLGDMLAQRPSEADGVESVVVVDNIPKVEPVR 71
            ||...|:..:   :|..:|.||.||.|:||:|:||||:|..||.||||::|||||||:|:|.|.|
 Frog     2 EEEESTEEEE---EEGMSFSDPEGFEDDISEEELLGDILKDRPQEADGIDSVVVVDNVPQVGPDR 63

  Fly    72 LEKLKLVINKLFSNYGEIVNVVYPVDEEGKTKGYAFMEYKQARQAEEAVKKLNNHRLDKNHTFAV 136
            |||||.||||:||.:|:|.|..|| :.||.|:||.|:||....||::|||..:.::|||.|||.|
 Frog    64 LEKLKNVINKIFSKFGKITNEYYP-EAEGTTRGYIFLEYALPTQAQDAVKNADCYKLDKQHTFRV 127

  Fly   137 NLFTDFQKYENIPEKWEPPTVQTFKVQSDLYNFINDPDTYDQYCVAAETAPNCVQVGFWQNVLPE 201
            ||||||.||..|.::||.|..|.||...:|.:::.|||..||:.|..|:......  ||.:| .|
 Frog   128 NLFTDFDKYMVIGDEWEAPEKQPFKDFGNLRSWLEDPDCRDQFSVIYESGDRTSI--FWTDV-KE 189

  Fly   202 PFELETRERFTDTFVKWSPLGTYVVTFHKPGVAIWGGSSFQKIQKFPHPGTQFVEFSPCENYLVT 266
            |..:|.|.|:|:|:|:|||.|||:.|||:.|:|:|||..|::||:|.|.|.|.::|||||.||||
 Frog   190 PVPVEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVT 254

  Fly   267 YGP----TPTGQKIIIWDIRTGAEKRSFVADGMSVLSMFRWSHDDKFVARMGENSIHIYETPSFY 327
            :.|    ....|.||||||.||..||.|..:..:...:|:||||.||.|||..:::.||||||..
 Frog   255 FSPLMDTKEEPQAIIIWDILTGQNKRGFHCESSAHWPIFKWSHDGKFFARMTLDTLSIYETPSMG 319

  Fly   328 LLDLKSIKIPGIRGFSWSPTDNVIAYWVEEQNQIPARVTLMEIPKKREIRNKNLFHVADCKLHWQ 392
            |||.||:||.||:.|||||..|:||:||.|...||||||||::|.::|||.:|||:|.|||||||
 Frog   320 LLDKKSLKITGIKDFSWSPGGNIIAFWVPEDKDIPARVTLMQLPSRQEIRVRNLFNVVDCKLHWQ 384

  Fly   393 KSGDYLCVKVDRYSKLKKDKKDLDVKFLGMFYNFEIFHMREKEIPVDSVEIRELILAFAWEPVGN 457
            |:||||||||||..|..:          |:..|||||.||||::|||.||:::.|:||||||.|:
 Frog   385 KNGDYLCVKVDRTPKGTQ----------GVVTNFEIFRMREKQVPVDVVEMKDGIIAFAWEPNGS 439

  Fly   458 KFSIIHGETNSSNVSFYEVNKGVKPSLVKRLEKKSCTHLFWSPRGQFIVMANLTM--GTFEFVDS 520
            ||:::|||....:||||.|....|..|:|..:|:....:||||:|||:|:|.|..  |...||| 
 Frog   440 KFAVLHGEVPRISVSFYHVKNNGKIELIKMYDKQQANTIFWSPQGQFLVLAGLRSMNGALAFVD- 503

  Fly   521 TNDYIITASPDHFRASEVEWDPTGRYVVTGVSSWKVKEDTGFNMYTFQGRIIKRTILKNFVQFLW 585
            |:|..|....:|:.||:||||||||||||.||.|..|.|..:.|:|||||::::.....|.|.||
 Frog   504 TSDCTIMNIAEHYTASDVEWDPTGRYVVTSVSWWSHKVDNAYWMWTFQGRLLQKNNKDRFCQLLW 568

  Fly   586 RPRPPTLLSEEKQKEIKKNLKKYYAAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWA 650
            |||||:|||:::.|:|||:||||...|||||||..::|||||:|:|..:.|.:..||......:.
 Frog   569 RPRPPSLLSQDQIKQIKKDLKKYSKIFEQKDRLSQSKASKELIERRRAMMEEYKTYREMAAKLYM 633

  Fly   651 EQKSRRIMLRGHVDTDNLET--DEVDEEIVEFLVKEEVTLLE 690
            |||:.|:.:||.||||.|::  |:.:||.:||.|.||:..:|
 Frog   634 EQKAARLEIRGGVDTDELDSNVDDWEEETIEFFVTEEIIPVE 675

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3bNP_611228.1 WD40 <216..352 CDD:295369 75/139 (54%)
WD40 repeat 216..248 CDD:293791 18/31 (58%)
WD40 repeat 297..321 CDD:293791 10/23 (43%)
RRM_eIF3B 56..137 CDD:240724 46/80 (58%)
COG5354 194..690 CDD:227657 261/503 (52%)
eif3bNP_001016724.1 RRM_eIF3B 60..128 CDD:240724 37/68 (54%)
COG5354 168..676 CDD:227657 266/522 (51%)
WD40 repeat 200..235 CDD:293791 20/34 (59%)
WD40 repeat 240..287 CDD:293791 23/46 (50%)
WD40 repeat 293..327 CDD:293791 21/33 (64%)
WD40 repeat 369..409 CDD:293791 26/49 (53%)
WD40 repeat 420..469 CDD:293791 24/48 (50%)
WD40 repeat 476..511 CDD:293791 17/35 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 264 1.000 Domainoid score I1885
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2780
Inparanoid 1 1.050 680 1.000 Inparanoid score I711
OMA 1 1.010 - - QHG54076
OrthoDB 1 1.010 - - D1194797at2759
OrthoFinder 1 1.000 - - FOG0003562
OrthoInspector 1 1.000 - - oto103146
Panther 1 1.100 - - LDO PTHR14068
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2436
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1111.080

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