DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4853 and Rasgef1c

DIOPT Version :9

Sequence 1:NP_611222.2 Gene:CG4853 / 36974 FlyBaseID:FBgn0034230 Length:709 Species:Drosophila melanogaster
Sequence 2:NP_001101743.1 Gene:Rasgef1c / 360519 RGDID:1311549 Length:466 Species:Rattus norvegicus


Alignment Length:448 Identity:166/448 - (37%)
Similarity:250/448 - (55%) Gaps:54/448 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   287 PKKGNLDSVVNLLINN----NTKDLRFAFLTTSRLFSPPHQLLSKII----------------AK 331
            |...:|::::..|:..    ..|...|.||.:||||..|.:||:::.                |:
  Rat    38 PSSASLETLIQHLVPTADYYPEKAYIFTFLLSSRLFIEPRELLARVCHLCIEQQQLDKPVLDKAR 102

  Fly   332 IDNEEENVLRLLNEWLDTCPGDFSHELLLQELENKRNVKGLAAFLDGIPQALAQKDENGRSQLNN 396
            :......:|:||.||.:|.|.||..|..:..|.:             :...::..||...::::.
  Rat   103 VRKFGAKLLQLLAEWTETFPRDFEEESTIGHLTD-------------VVGRISPCDETYGNRMHQ 154

  Fly   397 LL-TKQSSASSLGR--------QSSIKSLKRFAANVYKTDNVLNNCSSAFELAHQLYAIEYAYLS 452
            || |.....:|||:        ...|....:..|::::  .:|..||..:.||.||..:|...|.
  Rat   155 LLQTLHQKLASLGQGPEGLVGADKPISYRTKPPASIHR--ELLGVCSDPYTLAQQLTHVELERLR 217

  Fly   453 QIRLEEFVE-ILEKDELKTCISQTKAGTLGSNCISQVTIDSYVQWFNQLSYLTATEILKLGKKSQ 516
            .|..||||: .:.||.|        |||..........:::||:|||:|.||.||||....||.|
  Rat   218 HIGPEEFVQAFVNKDPL--------AGTKPRFNDKTNNVEAYVKWFNRLCYLVATEICMPAKKKQ 274

  Fly   517 RAQMIDFWVETALECFNTGNFNSLMAILTALNLTAIARLKKTWAKVQTTKFEGLEHQMDPSSNFL 581
            |||:|:|:::.|.||||.|||||||||::.:|::.::|||||||||:|.||..|||||||:.||.
  Rat   275 RAQVIEFFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWAKVKTAKFFILEHQMDPTGNFC 339

  Fly   582 NYRSTMKAAVWRSEREMANEIERAIIPFFSLFLKDLHAINESHETKLANGYINFEKCLHLGTQLR 646
            |||:.::.|..||....::. |:.:||||||.:||::.:||....:|.||::||||.|.|..|:.
  Rat   340 NYRTALRGAAHRSLTAHSSR-EKIVIPFFSLLIKDIYFLNEGCANRLPNGHVNFEKFLELAKQVG 403

  Fly   647 NFGKWQRLDCPYEQLPSVVSYLLKAEVLSEDLLMKASYESEPPETGEEKDHYKTLKAA 704
            .|..|::::||:||.||:..||..|.:.|||.|..||||||.||...||:.:|:|:::
  Rat   404 EFITWKQVECPFEQDPSITHYLYTAPIFSEDGLYLASYESESPENQTEKERWKSLRSS 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4853NP_611222.2 RasGEF_N 288..365 CDD:279012 25/96 (26%)
RasGEF 438..638 CDD:279011 96/200 (48%)
Rasgef1cNP_001101743.1 REM 42..163 CDD:100121 30/133 (23%)
RasGEF 200..447 CDD:214539 121/255 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 71 1.000 Domainoid score I9203
eggNOG 1 0.900 - - E1_KOG3541
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D246323at33208
OrthoFinder 1 1.000 - - FOG0001827
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104212
Panther 1 1.100 - - O PTHR23113
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1189
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.820

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