DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4853 and CG34393

DIOPT Version :9

Sequence 1:NP_611222.2 Gene:CG4853 / 36974 FlyBaseID:FBgn0034230 Length:709 Species:Drosophila melanogaster
Sequence 2:NP_001285578.1 Gene:CG34393 / 33534 FlyBaseID:FBgn0085422 Length:691 Species:Drosophila melanogaster


Alignment Length:755 Identity:157/755 - (20%)
Similarity:255/755 - (33%) Gaps:249/755 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 EEVLVSRNGQILDERTVETKENFNHQSHQKEIWHPVKQQSALARATPENALKYRTTSNSTFASQA 163
            :.||....||    |..:...:.:||.|::                 .:..:.|.:|||:    :
  Fly    21 QTVLQKSRGQ----RDRDKCHHGHHQHHRR-----------------HHRRRCRISSNSS----S 60

  Fly   164 TDSDERPVDPLGRQLNQTFSNASLMSSSSAITGSD-QVIGSVSSTTIGDKSSNISSCDSGH---- 223
            |||:.  .|..|.:|.:              :|:| :..|:.....:......|.|.|.||    
  Fly    61 TDSES--ADECGLELGE--------------SGADSREAGAGGGAGLQVAQGGIFSLDPGHLTAE 109

  Fly   224 DGLF---------HSVSMSAPWS----------------HPRDTLTDSLYCDIP------SSADE 257
            ..|.         ||....:.:.                .|::  .|.:..|:|      |..|.
  Fly   110 TALLGGNIRYRRRHSAEQLSAYDLEMGFQQLELGTTISVGPKN--EDLVQYDVPKNPHKRSQCDI 172

  Fly   258 SDAVSILNTHLKITEPFDCQTAPVYAKDIPKKGNLDSVVNLLINNNTKDLR----FAFLTTSRLF 318
            :...|:|.:           ...:|.......|.|||::..|:..:..||.    |:||.:.|||
  Fly   173 NFESSVLGS-----------GGIMYINGRIVSGPLDSLIETLLPKDVVDLDKEFVFSFLLSCRLF 226

  Fly   319 SPPHQLLSKIIAKIDNEE--ENVLRLLNEWLDTCPGDFSHELLLQELENKRNVKGLAAFLDG--I 379
            ..||:||.:::..:...|  |:::.||.||....|.|:..|.::.      :||.:.|....  :
  Fly   227 LRPHELLGRLLDSVPESECLESLVSLLAEWTMKFPYDYRDERMMS------HVKHIVARCSNSHL 285

  Fly   380 PQALAQKDENGRSQLNNLLTKQSSASSLGRQSSIKSLKRFAANVYKTDNVLNNCSSAFELAHQLY 444
            ..|::|       .|:.||.:   .:.|.|..:  .|:....|.........||.:|.:.|..:.
  Fly   286 EAAVSQ-------TLSALLKR---LTDLERHEA--DLRACQTNDKSGPETPLNCPTATQYAQIVC 338

  Fly   445 AIEYAYLSQIRLEEFVE-----ILEK-----------------DELKTCISQTKAGTLGSNCISQ 487
            .:|......|..|||::     :|:|                 |..|||                
  Fly   339 RVEKKLAKHIGGEEFLQCSSMILLDKQKKWDQPSTSGAPPGAQDPKKTC---------------- 387

  Fly   488 VTIDSYVQWFNQLSYLTATEILKLGKKSQRAQMIDFWVETALECFNTGNFNSLMAILTALNLTAI 552
             .:::|:.|..:|......|||:......|::.::.|...|..|...||:||..|||.:|...||
  Fly   388 -NLETYLDWSARLRLFVCNEILQSVGIEGRSRTVELWSGVAQYCLLVGNYNSATAILESLESPAI 451

  Fly   553 ARLKKTWAKVQTT---------KFEGLEHQMDPSSNFLNYR------------------------ 584
            ||||.||:|:|.|         ..||..|.....:..||.:                        
  Fly   452 ARLKITWSKLQVTCQQLDCMQRHAEGHGHLWQKQAISLNEQQEGLKTDKQAPKEPAAQGAAPTQG 516

  Fly   585 ------------------------------STMK----------------AAVWRSEREMA---- 599
                                          :||:                ||..|:....|    
  Fly   517 AVAIAITTSSDSDEKPSTSGRVAGIAGISAATMESAPVPVASGSNVDAATAAAARTSTTAATTPL 581

  Fly   600 ----NEIERAIIPFFSLFLKDLHAINESHETKLANGYINFEKCLHLGTQLRNFGKWQRLDCPYEQ 660
                ...:..:||.|:..:|......|:...:||||:||......:...:..|.|..:. ....|
  Fly   582 ASSGKPNDWVVIPVFADIVKLALGERENCLQRLANGHINMAAFDRMAAIVGAFTKHMQA-MKAAQ 645

  Fly   661 LPSVVSY------LLKAEVLSEDLLMKASYESEPPETGEE 694
            .||...|      :.:...|.|..||.||::.|.|...|:
  Fly   646 APSSGEYEHFCRHMQQTTKLGEAELMMASFDCEEPNNAEK 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4853NP_611222.2 RasGEF_N 288..365 CDD:279012 26/82 (32%)
RasGEF 438..638 CDD:279011 63/308 (20%)
CG34393NP_001285578.1 REM 196..300 CDD:100121 33/119 (28%)
RasGEF 334..>473 CDD:279011 41/155 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3541
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3112
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D246323at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.870

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