DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4853 and Rasgef1b

DIOPT Version :9

Sequence 1:NP_611222.2 Gene:CG4853 / 36974 FlyBaseID:FBgn0034230 Length:709 Species:Drosophila melanogaster
Sequence 2:NP_665838.1 Gene:Rasgef1b / 320292 MGIID:2443755 Length:473 Species:Mus musculus


Alignment Length:456 Identity:172/456 - (37%)
Similarity:268/456 - (58%) Gaps:69/456 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 GNLDSVVNLLINN----NTKDLRFAFLTTSRLFSPPHQLLSKI---------IAKIDNEEE---- 337
            |:|::::..|:.|    ..:...|.||.:||||..|::|::|:         :::.|.::.    
Mouse    41 GSLEALIQHLVPNVDYYPDRTYIFTFLLSSRLFMHPYELMAKVCHLCVEHQRLSEGDGDKNQMRK 105

  Fly   338 ---NVLRLLNEWLDTCPGDFSHELLLQELEN-------------KRNVKGLAAFLDGIPQALAQK 386
               .:|:||.||.:|.|.||..|.:::.|::             ::||:.:...|.....||:|.
Mouse   106 IAPKILQLLTEWTETFPYDFRDERMMRNLKDLAHRMASGEEQTYRKNVQQMMQCLIRKLAALSQY 170

  Fly   387 DENGRSQLNNLLTKQSSASSLGRQSSIK----SLKRFAANVYKTDNVLNNCSSAFELAHQLYAIE 447
            :|        :|.|.||.:: .|.:.:|    |::|         :::..||..:.||.||..||
Mouse   171 EE--------VLAKLSSTAT-DRLTVLKTKPQSIQR---------DIMTVCSDPYTLAQQLTHIE 217

  Fly   448 YAYLSQIRLEEFVE-ILEKDEL---KTCISQTKAGTLGSNCISQVTIDSYVQWFNQLSYLTATEI 508
            ...|:.|..||||: .::||.|   |:|.|:.|         ....:::||:|||:||||.||||
Mouse   218 LERLNYIGPEEFVQAFVQKDPLDNDKSCYSERK---------KTRNLEAYVEWFNRLSYLVATEI 273

  Fly   509 LKLGKKSQRAQMIDFWVETALECFNTGNFNSLMAILTALNLTAIARLKKTWAKVQTTKFEGLEHQ 573
            ....||..||:||:::::.|.||||.|||||||||::.:|::.::|||||||||:|.||:.||||
Mouse   274 CMPVKKKHRARMIEYFIDVARECFNIGNFNSLMAIISGMNMSPVSRLKKTWAKVKTAKFDILEHQ 338

  Fly   574 MDPSSNFLNYRSTMKAAVWRSEREMANEIERAIIPFFSLFLKDLHAINESHETKLANGYINFEKC 638
            |||||||.|||:.::.|..||....::. |:.:||||||.:||::.:||....:|.||::||||.
Mouse   339 MDPSSNFYNYRTALRGAAQRSLTAHSSR-EKIVIPFFSLLIKDIYFLNEGCVNRLPNGHVNFEKF 402

  Fly   639 LHLGTQLRNFGKWQRLDCPYEQLPSVVSYLLKAEVLSEDLLMKASYESEPPETGEEKDHYKTLKA 703
            ..|..|:..|..|::::||:|:...|:.|||...|.|||.|..||||||.||...|||.:|:|::
Mouse   403 WELAKQVSEFMTWKQVECPFERDRKVLQYLLSVPVFSEDALYLASYESEGPENNIEKDRWKSLRS 467

  Fly   704 A 704
            :
Mouse   468 S 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4853NP_611222.2 RasGEF_N 288..365 CDD:279012 26/94 (28%)
RasGEF 438..638 CDD:279011 99/203 (49%)
Rasgef1bNP_665838.1 REM 42..167 CDD:100121 28/124 (23%)
RasGEF 209..403 CDD:366198 100/203 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848168
Domainoid 1 1.000 69 1.000 Domainoid score I9575
eggNOG 1 0.900 - - E1_KOG3541
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3112
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001827
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104212
Panther 1 1.100 - - O PTHR23113
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1189
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.650

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