DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment qkr54B and khdrbs1

DIOPT Version :9

Sequence 1:NP_001261050.1 Gene:qkr54B / 36966 FlyBaseID:FBgn0022987 Length:617 Species:Drosophila melanogaster
Sequence 2:NP_001017045.1 Gene:khdrbs1 / 549799 XenbaseID:XB-GENE-479347 Length:360 Species:Xenopus tropicalis


Alignment Length:377 Identity:128/377 - (33%)
Similarity:187/377 - (49%) Gaps:77/377 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 EKANEYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTTGRI-PSREQKYADIYREKPLRISQRVL 126
            |...:|:.:.|||::.:|..|..|..||..|||:::..|.. ...|..|.|::..|.:::.:|:|
 Frog     2 ETETKYLPELMAEKDSLDPSFTHAMSLLGKEIERLKKGGDAKKDEEDTYLDLFSHKNMKLKERIL 66

  Fly   127 VPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKDPKYAHLNSD 191
            :|::.:||||||||:|||:||:::||||||..|::|||:.||||:.||||||...||||:|||.|
 Frog    67 IPVKLYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYSHLNMD 131

  Fly   192 LHVEISTIAPPAEAYARIAYAMAELRKYLIP---------DSNDIIRQEQLRELMDSTSLN--DN 245
            |||.|....||.|:|.|:|:||.|::|:|:|         |..|.|.|||..||   :.||  ..
 Frog   132 LHVFIEVFGPPCESYTRMAHAMEEVKKFLVPLTPESFSYQDMMDDICQEQFMEL---SYLNGAPP 193

  Fly   246 DNAKSGYKKTSHMQGGNNVLGG-------------GSINPI--------GGVKNTPHHSYRSSQP 289
            :.::.|.:     .|.:...||             |.:.|:        |.:......| |...|
 Frog   194 EQSRGGTR-----GGPSRGRGGPPPAAAPSSRGRAGPLRPLVPRGAPGRGAISRGASVS-RPVPP 252

  Fly   290 SSFSKNVLAPKQKVMSILEKARTAM----DETYGR-GYDDGLGYDPHQSYDSY--------SYGT 341
            ||.|:...|.:.:..:|   .|.::    .|||.. ||:|......::.|:.|        .|..
 Frog   253 SSASRGAPAGRARGAAI---QRISLPPPAPETYDEYGYEDSYAEPSYEGYEGYYSQSQGETEYYD 314

  Fly   342 HGHGPHGPPANILGGVGGISGGGGR------------GGHYESSDYEPDYGR 381
            :||| .||.:  ....|..:..|.|            ||.|.    |..|||
 Frog   315 YGHG-EGPES--YESYGQDNWNGSRPSLKVPSSRPLKGGAYR----EHPYGR 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qkr54BNP_001261050.1 Qua1 68..117 CDD:292891 16/49 (33%)
SF1_like-KH 122..237 CDD:239088 67/123 (54%)
khdrbs1NP_001017045.1 Qua1 6..58 CDD:406639 16/51 (31%)
KH-I 57..162 CDD:412160 60/104 (58%)
Sam68-YY 282..331 CDD:406871 13/51 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 88 1.000 Domainoid score I7806
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 180 1.000 Inparanoid score I3883
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1012406at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9347
Panther 1 1.100 - - O PTHR11208
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1163
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.160

Return to query results.
Submit another query.