DRSC/TRiP Functional Genomics Resources

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Protein Alignment qkr54B and Qki

DIOPT Version :10

Sequence 1:NP_001261050.1 Gene:qkr54B / 36966 FlyBaseID:FBgn0022987 Length:617 Species:Drosophila melanogaster
Sequence 2:NP_001401394.1 Gene:Qki / 499022 RGDID:1584886 Length:341 Species:Rattus norvegicus


Alignment Length:348 Identity:90/348 - (25%)
Similarity:153/348 - (43%) Gaps:83/348 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GNVQINEKAN---EYIRDCMAERNRMDRK------FPIAEKLLEGEIEKVQTTGRIPSREQKYAD 112
            |.::..||..   :|:...|.::..|...      |...|:||:.||.:|        |:..|.|
  Rat     3 GEMETKEKPKPTPDYLMQLMNDKKLMSSLPNFCGIFNHLERLLDEEISRV--------RKDMYND 59

  Fly   113 IYR--------EKP------LRISQRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVL 163
            ...        |.|      :::.:::.||::|:|.|||||::|||:|.:.::|:.||.||:.|.
  Rat    60 TLNGSTEKRSAELPDAVGPIVQLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVR 124

  Fly   164 GRNSMRDRVKEEELRSSKDPKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIP--DSND 226
            |:.||||:.|||:.|..  |.:.|||.||||.|:.......|..::..|:.|::|.|:|  :..|
  Rat   125 GKGSMRDKKKEEQNRGK--PNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGED 187

  Fly   227 IIRQEQLRELMDSTSLNDNDNAKS---GYKKTSHMQGGNNVLGGGSINPIGGVKNTPHHSYRSSQ 288
            .:::.||.||........:.|.||   .:...:..|....::.|.:  |:     .|..:.|:..
  Rat   188 SLKKMQLMELAILNGTYRDANIKSPALAFSLAATAQAAPRIITGPA--PV-----LPPAALRTPT 245

  Fly   289 PSSFSKNVLAPKQKVMSILEKARTAM---------DETYGRGYDDGLGYDPHQSYDSYSYGTHGH 344
            |:.         ..:|.::.:.:||:         ......|.:.||.|.|::    |.|..   
  Rat   246 PAG---------PTIMPLIRQIQTAVMPNGTPHPTAAIVPPGPEAGLIYTPYE----YPYTL--- 294

  Fly   345 GPHGP----------PANILGGV 357
               .|          |:.:||.|
  Rat   295 ---APATSILEYPIEPSGVLGAV 314

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qkr54BNP_001261050.1 Qua1 68..118 CDD:465079 14/63 (22%)
KH-I_KHDRBS 117..218 CDD:411812 41/106 (39%)
QkiNP_001401394.1 STAR_dimer 10..64 CDD:435414 14/61 (23%)
Qua1 domain, involved in homodimerization. /evidence=ECO:0000250|UniProtKB:Q17339 11..82 15/78 (19%)
KH-I_Hqk 81..183 CDD:411893 43/103 (42%)
Qua2 domain, involved in RNA binding. /evidence=ECO:0000250|UniProtKB:Q96PU8 182..213 8/30 (27%)
PHA03247 <211..314 CDD:223021 21/128 (16%)
SH3-binding 276..279 0/2 (0%)
Quaking_NLS 312..341 CDD:435421 2/3 (67%)
Nuclear localization signal. /evidence=ECO:0000250|UniProtKB:Q9QYS9 324..330
Blue background indicates that the domain is not in the aligned region.

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