DRSC/TRiP Functional Genomics Resources

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Protein Alignment qkr54B and khdrbs1a

DIOPT Version :9

Sequence 1:NP_001261050.1 Gene:qkr54B / 36966 FlyBaseID:FBgn0022987 Length:617 Species:Drosophila melanogaster
Sequence 2:NP_571000.1 Gene:khdrbs1a / 30082 ZFINID:ZDB-GENE-000210-25 Length:370 Species:Danio rerio


Alignment Length:377 Identity:123/377 - (32%)
Similarity:186/377 - (49%) Gaps:58/377 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 DPGGNVQINEKAN-EYIRDCMAERNRMDRKFPIAEKLLEGEIEKVQTTGRIPSREQKYADIYREK 117
            ||..|.:.|...: :|:.:.:||::.:|..|..|.|||..|||:|| .|......:.|.|::..|
Zfish     2 DPNSNKRKNNAGDGKYLPELLAEKDSLDSSFTHAMKLLSAEIERVQ-KGEPKKDSELYLDLFASK 65

  Fly   118 PLRISQRVLVPIREHPKFNFVGKLLGPKGNSLRRLQEETLCKMTVLGRNSMRDRVKEEELRSSKD 182
            .:|:.:|||:|::::|:||||||:|||:|::::||||:|..|::|||:.||||:.||||||...|
Zfish    66 SVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRDKNKEEELRKGGD 130

  Fly   183 PKYAHLNSDLHVEISTIAPPAEAYARIAYAMAELRKYLIP-DSNDIIRQEQLRELMDSTSLND-N 245
            ||||||..:|||.|...||..:.|.|:|:||.|::|:|:| :..|.:..:   ..||...||. .
Zfish   131 PKYAHLGMELHVHIEVFAPIPDCYLRMAHAMDEVKKFLMPVEGMDEMHPD---AFMDPGFLNGAQ 192

  Fly   246 DNAKSGYKKTSHMQGGNNVLG-------------GGSINPIGG------VKNTPHHSYRSSQPSS 291
            |.:..|.......:||...:|             ||:  |.||      .:..| ......||.:
Zfish   193 DMSGHGRGMPGRGRGGPPPMGARGRGMPPRGAPRGGA--PRGGPGRGAAARGAP-AGRGGPQPPT 254

  Fly   292 FSKNVLAPKQKVMSILEKAR----------TAMDETYGR-GYDDGLGYDPHQSYDSY-------- 337
            .::...|.:.:..:  :.||          .|..||||. .|::......::.|:||        
Zfish   255 PTRGGAASRSRPPT--QAARMTPAAGLSHQQAKPETYGEYAYEEPYAEASYEGYESYYSQQPAQP 317

  Fly   338 --SYGTHGHGPHGPPANIL------GGVGGISGGGGRGGHYESSDYEPDYGR 381
              .|..:|||.........      ||..|.:||.........|..|..|||
Zfish   318 DTEYYDYGHGEAQESYESYTEDDWEGGAWGGAGGKAPTARQGKSFREHPYGR 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
qkr54BNP_001261050.1 Qua1 68..117 CDD:292891 17/48 (35%)
SF1_like-KH 122..237 CDD:239088 57/115 (50%)
khdrbs1aNP_571000.1 Qua1 17..65 CDD:292891 17/48 (35%)
SF1_like-KH 70..190 CDD:239088 60/122 (49%)
Sam68-YY 289..340 CDD:293176 10/50 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170590113
Domainoid 1 1.000 87 1.000 Domainoid score I7974
eggNOG 1 0.900 - - E1_COG5176
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 190 1.000 Inparanoid score I3866
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1012406at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11208
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1163
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
109.860

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