DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tes and Trip6

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:NP_001121042.1 Gene:Trip6 / 686323 RGDID:1583180 Length:480 Species:Rattus norvegicus


Alignment Length:564 Identity:125/564 - (22%)
Similarity:181/564 - (32%) Gaps:186/564 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 LQEKKLNISRDPK--------LGPIAEFRKEYVNNPQFRAEINTICPQPPMTPIKSPPGTPFNSP 368
            |..|:...||.|:        |||..........:|:    :| .||.|| .....|||.|.:  
  Rat     7 LPPKQPEPSRVPQGRALPRGTLGPPTAHGATLQPHPR----VN-FCPLPP-EQCYQPPGVPED-- 63

  Fly   369 LPLKNPVQI--RMGAQMRQDTPMRRVKFGGVSTIVYDCGLPANTDY------------------- 412
               :.|..:  ...||..|..|..|       .:::...|.|..|.                   
  Rat    64 ---RGPTWVGSHGAAQRLQGLPPDR-------GVIHPGSLDAEIDSLTSMLADLDGSRSHAPRRP 118

  Fly   413 DRDPVFAQILQAEPLKHAFQEARAGR-APSSVVISNIPAPVASLAELRGLNPATRAQLQSVGLDK 476
            ||     |..:|.| .||:   |.|. .||.   ..:|||:...:...|..||:.|         
  Rat   119 DR-----QAFEAPP-PHAY---RGGSLKPSG---GAVPAPMLPASPYGGPTPASYA--------- 162

  Fly   477 NMLQSAVSNAPYYDRLFRSLHDKGISHDQCHLLQPMKQVHDWLLDDDQLLDEIDKVFADMANGCK 541
               .::....|.:.             .|..:.||::..            .:.:..|..|:|  
  Rat   163 ---TASTPAGPAFP-------------VQVKVAQPVRGC------------GLPRRGASQASG-- 197

  Fly   542 DISYPKPSLGELPTSQSSDSGFHSKPPTPGYGSEDLTAG---------------QGRFASIPG-- 589
              ..|.|........:...:|:.|. ..||.|.::..||               ||..:..|.  
  Rat   198 --PLPGPHFPLTGRGEVWGAGYRSH-REPGPGVKEGAAGVHNPAGGGRRGGHEPQGPLSQPPEEE 259

  Fly   590 --------IEDMNMYPS------CAGMPEQFQQLRLHGDEASGKNSTRTILCADCNQPIAMGEVA 640
                    :.|||..||      |.|.          ||:..|..:               |.||
  Rat   260 LERLTKKLVHDMNHPPSGEYFGRCGGC----------GDDVVGDGA---------------GVVA 299

  Fly   641 VKADRAGKEIAWHPGCFKCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEY 705
            :  ||     .:|.|||.|.|||..|....::..:.:.:|.......|:  :|..|.|.|..:..
  Rat   300 L--DR-----VFHTGCFVCSTCRAQLRGQHFYAVERRAYCESCYVATLE--KCSTCSEPILDRIL 355

  Fly   706 TAAEEATFHIKHFCCYQCDEPLAGQQYIADEKSNMPLCLLCYDRLFAVRCQRCKVAIGPADQG-- 768
            .|..:| :|...|.|..|...|.|..:..|..|.:. |:..:.|.||.||..|..||.| :.|  
  Rat   356 RAMGKA-YHPGCFTCVVCHRGLDGIPFTVDATSQIH-CIEDFHRKFAPRCSVCGGAIMP-EPGQE 417

  Fly   769 ----VAWGDVHWHASCFVC--AGVQCSK--------PLIGGRFC 798
                :...|..:|..|:.|  .|:..|.        ||.|...|
  Rat   418 ETVRIVALDRSFHIGCYKCEECGLLLSSEGECQGCYPLDGHILC 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604
LIM1_Testin_like 627..684 CDD:188726 15/56 (27%)
LIM2_Testin_like 691..748 CDD:188727 15/56 (27%)
LIM 755..810 CDD:295319 16/60 (27%)
Trip6NP_001121042.1 PHA03247 <3..256 CDD:223021 63/320 (20%)
LIM1_TRIP6 283..336 CDD:188736 20/84 (24%)
LIM 343..402 CDD:413332 18/60 (30%)
LIM3_Zyxin_like 403..465 CDD:188743 16/60 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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