DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tes and Lims1

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:XP_017457250.1 Gene:Lims1 / 499443 RGDID:1560732 Length:407 Species:Rattus norvegicus


Alignment Length:194 Identity:61/194 - (31%)
Similarity:89/194 - (45%) Gaps:38/194 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   627 CADCNQPIAMGEVAVKADRAGKEIAWHPGCFKCITCRELLADLVYFFHQGQVFC----GRDLAIR 687
            |..|.:.| :|.| :||    ...:|||.||:|..|:|:|||:.:..:.|:..|    .|:.|..
  Rat   142 CHQCGEFI-IGRV-IKA----MNNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKARG 200

  Fly   688 LKIPRCRAC----DE--LIFTKEYTAAEEATFHIKHFCCYQCDEPLAGQQYIAD--EKSNMPLCL 744
            |....|:.|    ||  |||..:       .:|..||.|..|     |::..||  |......||
  Rat   201 LGKYICQKCHAIIDEQPLIFKND-------PYHPDHFNCANC-----GKELTADARELKGELYCL 253

  Fly   745 LCYDRLFAVRCQRCKVAIGPADQGV--AWGDVHWHASCFVCAGVQCSKPLIGGRFCVKENMPFC 806
            .|:|::....|..|:   .|.:..|  |.|. .||...||||  :|.||.:|.|...::.:.:|
  Rat   254 PCHDKMGVPICGACR---RPIEGRVVNAMGK-QWHVEHFVCA--KCEKPFLGHRHYERKGLAYC 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604
LIM1_Testin_like 627..684 CDD:188726 21/60 (35%)
LIM2_Testin_like 691..748 CDD:188727 19/64 (30%)
LIM 755..810 CDD:295319 18/54 (33%)
Lims1XP_017457250.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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