DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tes and lmcd1

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:NP_957364.2 Gene:lmcd1 / 394045 ZFINID:ZDB-GENE-040426-1067 Length:342 Species:Danio rerio


Alignment Length:723 Identity:119/723 - (16%)
Similarity:171/723 - (23%) Gaps:433/723 - (59%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 AGAGAPCAECKDKCPGLDLHFWRKVCRNCKCPKIQH--VCPDDDDATGWAQFEILGQIRAKPAYI 100
            ||.||.|..||..|||...|.|||.|..|:|.:.:|  :..::||..       :|::.|...|.
Zfish     8 AGKGAACLTCKGICPGFQPHSWRKACVKCQCSQDEHAFISNNEDDLK-------VGRLLADSRYT 65

  Fly   101 KIKA----------------LASQP-----------VQLEWVPPNAAPDVVTDYMEKLGTAQIPV 138
            .:.|                :.:.|           |..:|.|......:...||..|...:.||
Zfish    66 HLTAKVKGGDGTRVYKRNRMIVTNPVVSRKDPTFNTVTYDWAPTGLTQKLAMLYMSLLPEERRPV 130

  Fly   139 AGSDAALKRKMQLELQVPPHDLDAALCDGLTETEAIQLQQYVQKLREQCVGQGVVVRLGDRLNHA 203
            ||::.:|.|..||..|:|.:|.|.|.|..|:|.|...:.|:|:..:|:.:|.|.|...|::    
Zfish   131 AGTEGSLYRHKQLTRQLPAYDHDPAYCHSLSEAELKVMAQFVKSYKEESLGVGEVALPGEK---- 191

  Fly   204 QVEHVAPALMPTQEAQQTWQSLGLMPVADDTLNELLANPKVAQALASPASAHPKLLVAFSEPLCE 268
                                                                             
Zfish   192 ----------------------------------------------------------------- 191

  Fly   269 STAQFEENGALRAQTREKLLGISKPALLSLVTHGIVYDKVLGILQEKKLNISRDPKLGPIAEFRK 333
            ||.:                                                           |.
Zfish   192 STTK-----------------------------------------------------------RN 197

  Fly   334 EYVNNPQFRAEINTICPQPPMTPIKSPPGTPFNSPLPLKNPVQIRMGAQMRQDTPMRRVKFGGVS 398
            |.::..|         |.||:|. ::|.|.                                   
Zfish   198 EKISQEQ---------PDPPLTE-QTPDGA----------------------------------- 217

  Fly   399 TIVYDCGLPANTDYDRDPVFAQILQAEPLKHAFQEARAGRAPSSVVISNIPAPVASLAELRGLNP 463
                                                                             
Zfish   218 ----------------------------------------------------------------- 217

  Fly   464 ATRAQLQSVGLDKNMLQSAVSN-APYYDRLFRSLHDKGISHDQCHLLQPMKQVHDWLLDDDQLLD 527
                           ::|.||| ..||                                      
Zfish   218 ---------------IESPVSNETEYY-------------------------------------- 229

  Fly   528 EIDKVFADMANGCKDISYPKPSLGELPTSQSSDSGFHSKPPTPGYGSEDLTAGQGRFASIPGIED 592
                                                                             
Zfish   230 ----------------------------------------------------------------- 229

  Fly   593 MNMYPSCAGMPEQFQQLRLHGDEASGKNSTRTILCADCNQPIAMGEVAVKADRAGKEIAWHPGCF 657
                                              |:.|.|..||.|..|.|||||.|..|||.||
Zfish   230 ----------------------------------CSGCGQLAAMDEPVVYADRAGYERLWHPACF 260

  Fly   658 KCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHI---KHFC 719
            .|..|.|.|.||:||:.:|.:.|||.....:: |||..||||||:.  ...:||:.|:   :|||
Zfish   261 VCGECGEALVDLIYFWKEGALLCGRHYCQSIR-PRCLGCDELIFSD--MLLQEASGHVWHKEHFC 322

  Fly   720 CYQCDEPL 727
            |:.|.:.:
Zfish   323 CWLCGQDI 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604 29/86 (34%)
LIM1_Testin_like 627..684 CDD:188726 30/56 (54%)
LIM2_Testin_like 691..748 CDD:188727 17/40 (43%)
LIM 755..810 CDD:295319
lmcd1NP_957364.2 PET_testin 102..189 CDD:193604 29/86 (34%)
LIM1_Testin_like 230..287 CDD:188726 30/56 (54%)
LIM 293..>326 CDD:295319 16/34 (47%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594461
Domainoid 1 1.000 65 1.000 Domainoid score I10042
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 1 1.000 - - FOG0001604
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24211
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.850

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