DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tes and lim-9

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:NP_001300395.1 Gene:lim-9 / 3565712 WormBaseID:WBGene00006407 Length:793 Species:Caenorhabditis elegans


Alignment Length:360 Identity:105/360 - (29%)
Similarity:150/360 - (41%) Gaps:85/360 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   505 QCHLLQPMKQVHDWLLDDDQLLDEIDKVFADMANGCKDISYPKPS--------LGELPTSQSSDS 561
            :|||  ..|| |.|           .||.....:...|...| |:        ||..|.:....|
 Worm   267 ECHL--GWKQ-HPW-----------RKVCVHCKSDRSDHELP-PNQALNVYNRLGIQPPAGMPQS 316

  Fly   562 GFHSKPPTPGYGSEDLTAGQGRFASIPGI------EDMNMYPS---------------------- 598
            |. ::|..||      :.|.|.....||:      |.|:..|:                      
 Worm   317 GV-AEPEVPG------SVGHGYAWVPPGLSRKKVEEYMSQLPNNVVPRTNSNGEKLREKQLLLQL 374

  Fly   599 ---------CAGMPEQFQQLRLHGDEASGKNS------------TRTILCADCNQPIAMGEVAVK 642
                     |..:..|.:: :::.:..:.:|.            .:.:.|..|:..:...|:||.
 Worm   375 PRQDLSVAYCRHLTSQTER-KVYEEFVNARNEIALDIGYVSSNINKAMECHKCSGILETNEMAVI 438

  Fly   643 ADRAGKEIAWHPGCFKCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTA 707
            |.:.|....|||.||.|..|.:||.||.|.....|::|.|..| .|..|||.|||||||..|||.
 Worm   439 APKLGDSTGWHPACFTCQACEQLLVDLTYCVKDNQIYCERHYA-ELHKPRCSACDELIFAGEYTK 502

  Fly   708 AEEATFHIKHFCCYQCDEPLAGQQYIADEKSNMPLCLLCYDRLFAVRCQRCKVAIGPADQGVAWG 772
            |....:|..||||:|||:.|.||:||.  :...|.|:.||:.:||.:|..|...||...:.:::.
 Worm   503 AMNKDWHSDHFCCWQCDQTLTGQRYIM--RDEQPYCIKCYEDVFANQCDECAKPIGIDSKDLSYK 565

  Fly   773 DVHWHASCFVCAGVQCSKPLIGGRFCVKENMPFCS 807
            |.|||..||:|:  .|...|:...|..|.:..|||
 Worm   566 DKHWHEHCFLCS--MCKISLVDMPFGSKNDRIFCS 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604
LIM1_Testin_like 627..684 CDD:188726 22/56 (39%)
LIM2_Testin_like 691..748 CDD:188727 30/56 (54%)
LIM 755..810 CDD:295319 18/53 (34%)
lim-9NP_001300395.1 PET_LIMPETin_LIM-9 329..412 CDD:193605 9/83 (11%)
LIM1_LIMPETin 423..480 CDD:188798 22/56 (39%)
LIM2_Testin_like 486..541 CDD:188727 30/56 (54%)
LIM3_LIMPETin 544..602 CDD:188805 20/57 (35%)
LIM4_LIMPETin 609..662 CDD:188809
LIM5_LIMPETin 670..721 CDD:188814
LIM6_LIMPETin 729..784 CDD:188816
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 47 1.000 Domainoid score I8096
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X39
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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