DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tes and Prickle2

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:XP_038963548.1 Gene:Prickle2 / 312563 RGDID:1306723 Length:939 Species:Rattus norvegicus


Alignment Length:795 Identity:149/795 - (18%)
Similarity:190/795 - (23%) Gaps:477/795 - (60%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GAPCAECKDKCPGLDLHFWRKVCRNCKCPKIQH---VCP------------------DDDDATGW 84
            |.||..|.|:|||..||.|||:|.:||||:.:|   |.|                  ..||.:|.
  Rat    60 GQPCNACGDQCPGFALHKWRKICLHCKCPQEEHMVTVMPLEMEKTISKLMFDFQRNSTSDDDSGC 124

  Fly    85 AQFEILGQIRAKPAYIKIKALASQPVQLEWVPPNAAPDVVTDYMEKLGTAQIPVAGSDAALKRKM 149
            |..|                       ..||||...|:.|..|...|...::|...|.....|..
  Rat   125 ALEE-----------------------YAWVPPGLKPEQVHQYYSCLPEEKVPYVNSPGEKLRIK 166

  Fly   150 QLELQVPPHDLDAALCDGLTETEAIQLQQYVQKLREQCVGQGVVVRLGDRLNHAQVEHVAPALMP 214
            ||..|:||||.:...|:.|.|.|..:|                                      
  Rat   167 QLLHQLPPHDNEVRYCNSLDEEEKREL-------------------------------------- 193

  Fly   215 TQEAQQTWQSLGLMPVADDTLNELLANPKVAQALASPASAHPKLLVAFSEPLCESTAQFEENGAL 279
                                  :|.:|                                      
  Rat   194 ----------------------KLFSN-------------------------------------- 198

  Fly   280 RAQTREKLLGISKPALLSLVTHGIVYDKVLGILQEKKLNISRDPKLGPIAEFRKEYVNNPQFRAE 344
                                             |.|:.|:.|                       
  Rat   199 ---------------------------------QRKRENLGR----------------------- 207

  Fly   345 INTICPQPPMTPIKSPPGTPFNSPLPLKNPVQIRMGAQMRQDTPMRRVKFGGVSTIVYDCGLPAN 409
                                                              |.|.           
  Rat   208 --------------------------------------------------GNVR----------- 211

  Fly   410 TDYDRDPVFAQILQAEPLKHAFQEARAGRAPSSVVISNIPAPVASLAELRGLNPATRAQLQSVGL 474
                                                   |.||                      
  Rat   212 ---------------------------------------PFPV---------------------- 215

  Fly   475 DKNMLQSAVSNAPYYDRLFRSLHDKGISHDQCHLLQPMKQVHDWLLDDDQLLDEIDKVFADMANG 539
                                                                             
  Rat   216 ----------------------------------------------------------------- 215

  Fly   540 CKDISYPKPSLGELPTSQSSDSGFHSKPPTPGYGSEDLTAGQGRFASIPGIEDMNMYPSCAGMPE 604
                                                                             
  Rat   216 ----------------------------------------------------------------- 215

  Fly   605 QFQQLRLHGDEASGKNSTRT-ILCADCNQPIAMGEVAVKADRAGKEIAWHPGCFKCITCRELLAD 668
                             |.| .:|..|...|..|::||.|.|||..|.|||.||.|..|.|||.|
  Rat   216 -----------------TMTGAICEQCGGQIKGGDIAVFASRAGHGICWHPPCFICTVCNELLVD 263

  Fly   669 LVYFFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDEPLAGQQYI 733
            |:||:..|:::|||..|..|| |||.||||:||..|.|.||...:|::||||::|:..|.||:||
  Rat   264 LIYFYQDGKIYCGRHHAECLK-PRCAACDEIIFADECTEAEGRHWHMRHFCCFECETVLGGQRYI 327

  Fly   734 ADEKSNMPLCLLCYDRLFAVRCQRCKVAIGPADQG-VAWGDVHWHA--SCFVCAGVQCSKPLIGG 795
            .  |...|.|..|::.|:|..|..|...|| .||| :.:...||||  :||.||  .|.|.|:|.
  Rat   328 M--KEGRPYCCHCFESLYAEYCDTCAQHIG-IDQGQMTYDGQHWHATENCFCCA--HCKKSLLGR 387

  Fly   796 RFCVKENMPFCSPTC 810
            .|..|:...|||..|
  Rat   388 PFLPKQGQIFCSRAC 402

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604 23/86 (27%)
LIM1_Testin_like 627..684 CDD:188726 29/56 (52%)
LIM2_Testin_like 691..748 CDD:188727 28/56 (50%)
LIM 755..810 CDD:295319 24/57 (42%)
Prickle2XP_038963548.1 PET_Prickle 118..214 CDD:193602 37/372 (10%)
LIM1_Prickle 222..280 CDD:188799 29/57 (51%)
LIM2_Prickle 285..340 CDD:188802 28/56 (50%)
LIM3_Prickle 345..403 CDD:188804 25/61 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11468
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D422310at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X39
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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