DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tes and Lpp

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:XP_038944025.1 Gene:Lpp / 288010 RGDID:1310535 Length:797 Species:Rattus norvegicus


Alignment Length:617 Identity:120/617 - (19%)
Similarity:179/617 - (29%) Gaps:223/617 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 DKVLGILQEKKLNISRDPKL--GPIAEFRKEYVNNPQFRAEINTICPQPPMTPIKSP-------- 360
            |.:..||.:.:.:....|:.  |..:......|:.|....:...|..|||:|..|..        
  Rat   288 DSLTSILADLECSSPYKPRAPPGSSSSIASPPVSTPVTGHKRMVIPQQPPLTATKKSATKPQAIP 352

  Fly   361 -PGTPFNSPLPLKNPV-----------QIRMGAQMRQDTPMRRVKFGGVSTIVY----------- 402
             |.||..:..|...||           :.....|::...|......|..|..:|           
  Rat   353 IPVTPIGTLKPQPQPVPASYSTASTSSRPAFNVQVKSAQPSTHYMTGSSSGQMYGPGSRSYNTQQ 417

  Fly   403 -----DCGLP---ANTDY--------------------------------------DRDPVFAQI 421
                 .|..|   |.|||                                      :.||.:.|.
  Rat   418 VPLSAQCPPPTTCAGTDYAYIPPSGQQAESGFGYTSNQGRYFEPFFAACPSYGGRNEADPAYGQQ 482

  Fly   422 LQAEPLKHAFQEARAGRAPSSVVISNIPAPVASLAELRGLNPATRAQLQSVGLDKNMLQSAVSNA 486
            :|....|         |.|      ...||.|......|:...:       |..|..:...|| |
  Rat   483 VQPNTWK---------REP------GYAAPGAGNQNQPGMYSVS-------GPKKTYITDPVS-A 524

  Fly   487 PYYDRLFRSLHDKGISHDQCHLLQPMKQVHDWLLDDDQLLDEIDKVFADMANGCKDISYPKPSLG 551
            |                  |   .|..|..:.|:.:.::|   ..|..|..:|.:...:|.|   
  Rat   525 P------------------C---APPVQPKERLVKNQKVL---QNVVDDRVHGLRKSGFPAP--- 562

  Fly   552 ELPTSQSSDSGFHSKPPT--PGYGSEDLTAGQGRFASIPGIEDMNMYPSCAGMPEQFQQLRLHGD 614
                     .|..|.||:  |....|.||...        :.||...|:               |
  Rat   563 ---------MGPPSVPPSFRPEDELEHLTKKM--------LYDMENPPA---------------D 595

  Fly   615 EASGKNSTRTILCADCNQPI--------AMGEVAVKADRAGKEIAWHPGCFKCITCRELLADLVY 671
            :..|:       ||.|.:.:        ||.:|            :|..||.|:.|...|....:
  Rat   596 DYFGR-------CARCGENVVGEGTGCTAMDQV------------FHVDCFTCMVCDIKLRGQPF 641

  Fly   672 FFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKHFCCYQCDEPLAGQQYIADE 736
            :..:.:.:|  :......:.:|..|.:.|..:...|..:| :|...|.|..|...|.|..:..| 
  Rat   642 YAVEKKAYC--EPCYINTLEQCSVCSKPIMERILRATGKA-YHPHCFTCVMCHRSLDGIPFTVD- 702

  Fly   737 KSNMPLCLLCYDRLFAVRCQRCKVAIGPA------------DQGVAWGDVHWHA-SCFVCAGV-- 786
            ...:..|:..:.:.||.||..||..|.||            |:     |.|.|. .|..|.|:  
  Rat   703 ACGLIHCIEDFHKKFAPRCSVCKEPIMPAPGQEETVRIVALDR-----DFHVHCYRCEDCGGLLS 762

  Fly   787 ----QCSKPLIGGRFCVKENMPFCSPTCVRSL 814
                |...||.|...|..     |:...:|.|
  Rat   763 EGDNQGCYPLDGHILCKS-----CNSARIRVL 789

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604
LIM1_Testin_like 627..684 CDD:188726 13/64 (20%)
LIM2_Testin_like 691..748 CDD:188727 13/56 (23%)
LIM 755..810 CDD:295319 19/73 (26%)
LppXP_038944025.1 PHA03247 <15..429 CDD:223021 26/140 (19%)
dnaA 347..>534 CDD:237605 37/230 (16%)
LIM1_TRIP6 601..654 CDD:188736 13/66 (20%)
LIM 661..720 CDD:413332 15/60 (25%)
LIM3_TRIP6 721..786 CDD:188820 19/74 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1704
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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