DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tes and Ldb3

DIOPT Version :9

Sequence 1:NP_611215.1 Gene:Tes / 36965 FlyBaseID:FBgn0034223 Length:816 Species:Drosophila melanogaster
Sequence 2:NP_036048.3 Gene:Ldb3 / 24131 MGIID:1344412 Length:723 Species:Mus musculus


Alignment Length:675 Identity:144/675 - (21%)
Similarity:213/675 - (31%) Gaps:192/675 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 GLTETEAIQ--LQQYVQKLREQCVGQGVVVRLGDRL--NHAQVEHVAP---ALMPTQ-----EAQ 219
            ||...|.::  .|.|...||.:..|.|:   ||..|  ....|:..:|   |::.||     ||.
Mouse   197 GLYSAETLREMAQMYQMSLRGKASGAGL---LGGSLPVKDLAVDSASPVYQAVIKTQSKPEDEAD 258

  Fly   220 QTW-------QSLGLMPVADDTLNELLANP--KVAQALASPASAHPKLLVAFSEPLCESTAQFEE 275
            : |       ||.....:|..|..|.:.:|  :..:..::|....|......:.||..::||   
Mouse   259 E-WARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRRSSTPIEHAPVCTSQATSPLLPASAQ--- 319

  Fly   276 NGALRAQTREKLLGISKPALLSLVTHGIVYDKVLGILQEKKLNISRDPKLGPIAEFRKEYVNNPQ 340
                 :......:..|.....:..||.......                 ||.|    ..|.|| 
Mouse   320 -----SPAAASPIAASPTLATAAATHAAAASAA-----------------GPAA----SPVENP- 357

  Fly   341 FRAEINTICPQPPMTPIKSP-------PGTPFNSPLPLKNPVQIRMGAQMRQDTPMRRVKFGGVS 398
             |.:.:...|....:|..|.       |..|  :|.|                   |.|....:.
Mouse   358 -RPQASAYSPAAAASPAPSAHTSYSEGPAAP--APKP-------------------RVVTTASIR 400

  Fly   399 TIVYDCGLPANTDYDRDPVFAQILQAEPLKHAFQEARAGRAPSSVVISNIPAPVASLAELRGLNP 463
            ..||. .:||:: |...|.    ....|..:....|.|.....:...:..|||..|.:......|
Mouse   401 PSVYQ-PVPASS-YSPSPG----ANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTP 459

  Fly   464 ATRAQLQSVGLDKNMLQSAVSNAPYYDRLFRSLHDKGISHDQCHLLQPMKQVHDWLLDDDQLLDE 528
                                |.||.|.....:.:..|.|....   :|     .|:.|     |.
Mouse   460 --------------------SPAPNYTPTPSAAYSGGPSESAS---RP-----PWVTD-----DS 491

  Fly   529 IDKVFADMANGCKDISYPKPSLGELPTSQSSDSGFHSKPPTPGYGSEDLTAGQGRFASIPGIEDM 593
            ..:.||.               |:..|:.|..:.....|.....|.:.....:|.|      :..
Mouse   492 FSQKFAP---------------GKSTTTVSKQTLPRGAPAYNPTGPQVTPLARGTF------QRA 535

  Fly   594 NMYPSCAGMPEQFQQLRLHGDEASGKNSTRTILCADCNQPI------AMGEVAVKADRAGKEIAW 652
            ..:|:                      |:||.||..||..|      |||.            :|
Mouse   536 ERFPA----------------------SSRTPLCGHCNNVIRGPFLVAMGR------------SW 566

  Fly   653 HPGCFKCITCRELLADLVYFFHQGQVFCGRDLAIRLKIPRCRACDELIFTKEYTAAEEATFHIKH 717
            ||..|.|..|:..|||:.:...|..|:|.|... :...|.|..|:..|. .|...|...|:|...
Mouse   567 HPEEFNCAYCKTSLADVCFVEEQNNVYCERCYE-QFFAPICAKCNTKIM-GEVMHALRQTWHTTC 629

  Fly   718 FCCYQCDEPLAGQQYIADEKSNMPLCLLCYDRLFAVRCQRCKVAIGPADQGV-AWGDVHWHASCF 781
            |.|..|.:|.....:..::  ..|.|...|..||:.:|..|...:...|:.: |.|.. ||.:||
Mouse   630 FVCAACKKPFGNSLFHMED--GEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHT-WHDTCF 691

  Fly   782 VCAGVQCSKPLIGGRFCVKENMPFC 806
            :||  .|...|.|..|..|::.|.|
Mouse   692 ICA--VCHVNLEGQPFYSKKDKPLC 714

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TesNP_611215.1 PET_testin 110..197 CDD:193604 9/31 (29%)
LIM1_Testin_like 627..684 CDD:188726 20/62 (32%)
LIM2_Testin_like 691..748 CDD:188727 14/56 (25%)
LIM 755..810 CDD:295319 18/53 (34%)
Ldb3NP_036048.3 PDZ_signaling 5..81 CDD:238492
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..134
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 164..193
DUF4749 191..293 CDD:374237 26/99 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..423 33/200 (17%)
PHA03247 <378..528 CDD:223021 37/224 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 436..525 22/136 (16%)
LIM1_ZASP_Cypher 547..598 CDD:188838 20/62 (32%)
LIM2_Enigma_like 606..657 CDD:188748 13/53 (25%)
LIM3_ZASP_Cypher 665..719 CDD:188844 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.