DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment l(2)k01209 and Jup

DIOPT Version :9

Sequence 1:NP_725672.2 Gene:l(2)k01209 / 36953 FlyBaseID:FBgn0022029 Length:626 Species:Drosophila melanogaster
Sequence 2:NP_112309.2 Gene:Jup / 81679 RGDID:620412 Length:745 Species:Rattus norvegicus


Alignment Length:592 Identity:116/592 - (19%)
Similarity:188/592 - (31%) Gaps:216/592 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 VTE--QLYVDPYADLSNGLPGDLNCCPASPTTVPAKASLDSPLKRSGRRQRTTSIGNQTTTANPS 157
            |||  |.|.     ..:|:...:|.|..|   |.:|..||          ...:.|.|.|     
  Rat    13 VTEWQQTYT-----YDSGIHSGVNTCVPS---VSSKGLLD----------EDDTCGRQYT----- 54

  Fly   158 ECIIRANNRTIYTAGRPPWYNCAGQQV----------EPFVIGICGGSAS--------GKTTVAE 204
                 ....|.||.|.|........|:          |....|:.|..:|        |:||..:
  Rat    55 -----LKKTTTYTQGVPQSQGDLEYQMSTTARAKRVREAMCPGVSGEDSSLLLATQVEGQTTNLQ 114

  Fly   205 KIIESLDVPWVTLLSMDCFYKILNEKQHEQALINEYNFDHPDAFDIELLLDVLTKLKEGRKVEVP 269
            ::.|    |...|.|               |:::..|:..    |.||....|.:|.:....|.|
  Rat   115 RLAE----PSQLLKS---------------AIVHLINYQD----DAELATRALPELTKLLNDEDP 156

  Fly   270 VYNFVTHG---------RESQTKTMYGANVIIFEGILTFHSPEVLKLLDMKIFVDTDPDIRLARR 325
            |  .||..         :|:..:.:.|:..::...:.|..:...|         ||   .|....
  Rat   157 V--VVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDL---------DT---ARCTTS 207

  Fly   326 LRRDISQRGRDLKGVLK--------QYLNMVKPSYCNYIAPTMAHADIIVPRGGDNKVAIHL--- 379
            :..::|.....|..:.|        :.|:....|...| |.|..|..::...|.  |:|:.|   
  Rat   208 ILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFY-AITTLHNLLLYQEGA--KMAVRLADG 269

  Fly   380 ---IVQHVHTQ-----------LQLRGFKLRET----LANSYKDQPMPHSLHLLHPTPQIKGLHT 426
               :|..::..           |||..:..:|:    |||.               .||  ||..
  Rat   270 LQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESKLIILANG---------------GPQ--GLVQ 317

  Fly   427 FIRCRNTSRDEFIFYSKRLIRLVIEYALSLFPFKKTTVETPQGVLYEGKRMES------------ 479
            .:  ||.|.::.::.:.|::::     ||:.|..|..:....|:...||.:.|            
  Rat   318 IM--RNYSYEKLLWTTSRVLKV-----LSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWT 375

  Fly   480 -RKICGVSILRAG------------------------ETMEQAVCDVCKDIRIGKILIQTNLKTG 519
             |.:..|:..:.|                        .|:....|:..|:    |.|:..|  :|
  Rat   376 LRNLSDVATKQEGLENVLKILVNQLSVDDVNVLTCATGTLSNLTCNNSKN----KTLVTQN--SG 434

  Fly   520 EPELYYLRLPKDIKDYKVILMDATVATGAAAMMAIRVLLDHDVPEDNIILASLLMAEIGVHSIA- 583
            ...|.:..|....||      |.|    ..|:.|:|.|.... ||          ||:..:|:. 
  Rat   435 VEALIHAILRAGDKD------DIT----EPAVCALRHLTSRH-PE----------AEMAQNSVRL 478

  Fly   584 -YAFPKV 589
             |..|.:
  Rat   479 NYGIPAI 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)k01209NP_725672.2 Udk 186..397 CDD:223645 46/252 (18%)
UMPK 188..387 CDD:238981 43/229 (19%)
UPRTase 417..620 CDD:291353 43/212 (20%)
JupNP_112309.2 Interaction with DSC1 and DSG1. /evidence=ECO:0000250 132..297 35/185 (19%)
armadillo repeat 144..169 CDD:293788 7/26 (27%)
armadillo repeat 186..212 CDD:293788 5/37 (14%)
armadillo repeat 221..253 CDD:293788 7/32 (22%)
Arm 221..253 CDD:395413 7/32 (22%)
armadillo repeat 261..297 CDD:293788 7/35 (20%)
ARM 5 298..341 14/66 (21%)
armadillo repeat 305..338 CDD:293788 11/56 (20%)
PLN03200 <328..>658 CDD:215629 36/190 (19%)
ARM 341..381 CDD:214547 7/39 (18%)
ARM 6 342..381 7/38 (18%)
armadillo repeat 345..380 CDD:293788 6/34 (18%)
ARM 7 383..420 2/36 (6%)
armadillo repeat 393..418 CDD:293788 1/24 (4%)
ARM 8 423..464 15/56 (27%)
armadillo repeat 426..464 CDD:293788 14/49 (29%)
ARM 9 470..510 4/16 (25%)
armadillo repeat 470..508 CDD:293788 4/16 (25%)
ARM 10 512..551
armadillo repeat 515..572 CDD:293788
Interaction with DSC1. /evidence=ECO:0000250 574..661
armadillo repeat 577..611 CDD:293788
armadillo repeat 618..652 CDD:293788
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0572
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.