DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha5 and pas-4

DIOPT Version :9

Sequence 1:NP_477202.2 Gene:Prosalpha5 / 36951 FlyBaseID:FBgn0016697 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_492360.1 Gene:pas-4 / 172679 WormBaseID:WBGene00003925 Length:253 Species:Caenorhabditis elegans


Alignment Length:242 Identity:83/242 - (34%)
Similarity:138/242 - (57%) Gaps:15/242 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 SEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPSTVEKIVEV 70
            :.|||.:..|||:|.|||||||.||:|.||||:|:...:.:|:.|||:....|....|:.||..:
 Worm     2 NRYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTIRKIHMI 66

  Fly    71 DKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAM 135
            |.|:..|.:||.||||.|::|||:|||::.....:.:::...::.::....:|..|..       
 Worm    67 DDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPG------- 124

  Fly   136 SRPFGVAILFAGIE-AGQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDI 199
            .||||:::|..|.: .|.|:|:..:|||.:..:.|.|.|.|.:..::.|::.:..:.|:|||..:
 Worm   125 RRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTL 189

  Fly   200 SL--NTLKQVMEEKLNSTNVEVMTMTK---EREFYMFTKEEVEQHIK 241
            .|  .:|.||:..  .|.|:|:..|.|   |.:..:.:.||:|..:|
 Worm   190 KLVVKSLAQVVPP--GSQNIEIAVMKKVNDELQQRVLSTEEIEALLK 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha5NP_477202.2 PRK03996 8..243 CDD:235192 83/240 (35%)
proteasome_alpha_type_5 8..222 CDD:239722 76/216 (35%)
pas-4NP_492360.1 PRK03996 4..234 CDD:235192 82/238 (34%)
proteasome_alpha_type_7 4..212 CDD:239724 76/216 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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