DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha5 and pbs-4

DIOPT Version :9

Sequence 1:NP_477202.2 Gene:Prosalpha5 / 36951 FlyBaseID:FBgn0016697 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_491261.1 Gene:pbs-4 / 171975 WormBaseID:WBGene00003950 Length:202 Species:Caenorhabditis elegans


Alignment Length:138 Identity:30/138 - (21%)
Similarity:49/138 - (35%) Gaps:27/138 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 IGICTPEGVVLAVEKRITS--PLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHW 100
            :||.|...|:||.:|...:  .::..|..:|...:.|.:.....|...|.....:..:...|   
 Worm     8 VGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKRNLQ--- 69

  Fly   101 FVYNERMSIE---SCA--------------QAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGI 148
             :|:.|...|   |||              |...|:.:..|...|.:..|.:.   .|..|..|:
 Worm    70 -LYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLG---SVDYLANGL 130

  Fly   149 EAGQPQLW 156
             ..||.|:
 Worm   131 -GQQPYLF 137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha5NP_477202.2 PRK03996 8..243 CDD:235192 30/138 (22%)
proteasome_alpha_type_5 8..222 CDD:239722 30/138 (22%)
pbs-4NP_491261.1 proteasome_beta_type_2 4..199 CDD:239727 30/138 (22%)
PRE1 8..199 CDD:223711 30/138 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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