DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10950 and Tnpo3

DIOPT Version :9

Sequence 1:NP_611200.2 Gene:CG10950 / 36942 FlyBaseID:FBgn0034205 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_001100057.1 Gene:Tnpo3 / 296954 RGDID:1308938 Length:923 Species:Rattus norvegicus


Alignment Length:616 Identity:160/616 - (25%)
Similarity:270/616 - (43%) Gaps:83/616 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 AEFTKELVIDAVNML-----SSGNISLANEYLAAFQKSNDTWIIAEEILSYRPPHDMHILTFAAM 62
            |:.|.:||..||..|     .||. ..|:.:|...|:|...|.|::::|..|  .|:....|||.
  Rat     4 AKPTLQLVYQAVQALYHDPDPSGK-ERASFWLGELQRSVHAWEISDQLLQIR--QDVESCYFAAQ 65

  Fly    63 SLAKKIKTSFYSLQKFQLMSLKNSLIDHLKYAAMMRDSNSLIV-QLAVGISALGLMFSQWDYELQ 126
            ::..||:||||.|......||::||:.|::   .::|.:.:|| |||:.|:.|.|....|...:|
  Rat    66 TMKMKIQTSFYELPTDSHASLRDSLLTHIQ---NLKDLSPVIVTQLALAIADLALQMPSWKGCVQ 127

  Fly   127 DFVRKLSENPQYVMALLEVLKVIPEETRPSNLPVEAKKLNSVIDTLEQQSPYILDVLEGLLQRPD 191
            ..|.|.|.:...:..|||:|.|:|||....:|.:.|.:...:|:.|...|..::.:|...:::..
  Rat   128 TLVEKYSNDVTSLPFLLEILTVLPEEVHSRSLRIGANRRTEIIEDLAFYSSTVVSLLMTCVEKAG 192

  Fly   192 LPDDALPKCLAVCASWTKFSMLSPDQVLQRKLFIMAEFILATPLVNGHL-EAAELFVALLEQSLI 255
            ..:..|.|......||....:|..:.:...||..:...:|.....:.:| |||...|.....::.
  Rat   193 TDEKMLMKVFRCLGSWFNLGVLDSNFMANNKLLALLFEVLQQDKTSSNLHEAASDCVCSALYAIE 257

  Fly   256 RKELNSCLA----NSVICLKPAFKRSMGERSL--LQNYCNIFVNLFQTHFRLTQTNPERLNERLV 314
            ..|.|..||    ..|:.|:.|:..::....|  :.|||.||..|.:|........|.:....|.
  Rat   258 NVETNLPLAMQLFQGVLTLETAYHMAVAREDLDKVLNYCRIFTELCETFLEKIVCTPGQGLGDLR 322

  Fly   315 TIELLLLVAEESPLEVIEASLGMWSSISEEVYLHDDPEMYSVYQPYFVRLLDLLLPRAALPANYE 379
            |:||||:.|.....||:|.|...|..:.|.:|..:|..::|:::.|..|||..|.....|..::|
  Rat   323 TLELLLICAGHPQYEVVEISFNFWYRLGEHLYKTNDEVIHSIFKAYIQRLLHALARHCQLEPDHE 387

  Fly   380 FMMPPGSADMQRFRELIGEVLLDMAHMIDD-DTVEKLCSIVVDEQSPWMEVEASVFFLRHLIGNF 443
             .:|..:.|...||..:.:::.|:..:|.. :...:|.|.:.:...||...||.:|         
  Rat   388 -GVPEETDDFGEFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLF--------- 442

  Fly   444 KEHQTDIISCILKTFFQKDCQQPFIRLQVLE-LISIPEIV-------SVETIWDCLVNELRRA-- 498
                  |::.|.|:.   |.:.....::||| ::.:||.|       |:|     ||.|:...  
  Rat   443 ------IMAAIAKSV---DPENNPTLVEVLEGVVHLPETVHTAVRYTSIE-----LVGEMSEVVD 493

  Fly   499 ------DPML-----------------SAID-----CRLNLLMPHWNYLVTLAIMVDEFCLKESE 535
                  ||:|                 .||.     || :.:..|:|.|:.:|..:|.|.|....
  Rat   494 RNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCR-DHMAQHFNGLLEIAHSLDSFMLSPEA 557

  Fly   536 RCELLCSICTLIRELPAACVQEAKTSILNIR 566
            ...||.....::..||...:.|..:.:.:::
  Rat   558 AVGLLKGTALVLARLPLDKITECLSELCSVQ 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10950NP_611200.2 IBN_N 25..91 CDD:197981 23/65 (35%)
Xpo1 103..>207 CDD:285575 29/104 (28%)
Tnpo3NP_001100057.1 IBN_N 33..96 CDD:197981 23/67 (34%)
Xpo1 121..248 CDD:400614 31/126 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2081
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR12363
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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