DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn53F and Serpina3b

DIOPT Version :9

Sequence 1:NP_001036553.1 Gene:Spn53F / 36931 FlyBaseID:FBgn0034195 Length:379 Species:Drosophila melanogaster
Sequence 2:NP_766612.1 Gene:Serpina3b / 271047 MGIID:2182835 Length:420 Species:Mus musculus


Alignment Length:395 Identity:84/395 - (21%)
Similarity:172/395 - (43%) Gaps:51/395 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 RAQKNSQLPDELYAAIVN---SFS----------NRNIMFSTEMIRSSMLFIYVGVEEDESEQIR 66
            :.|...:..|.|..|.:|   :||          ::||.||...|.:::..:.:|.:.:..|:|.
Mouse    34 KGQDTQKQLDSLTLASINTDFAFSFYKELALKNPHKNIAFSPFGIATALNSLTLGAKGNTLEEIL 98

  Fly    67 KAMHYRGTHLSE------YKPKTQKIF----AMSVKKAPVAKSLTRFYVRQNMKMSTEYRVFMR- 120
            :.:.:..|..||      :|...|::.    .:.::..      ...:|.:::::..|::...| 
Mouse    99 EVLKFNLTETSEADIHQGFKHLLQRLSHPGDQVQIRTG------NALFVEKHLQILAEFKEKARA 157

  Fly   121 --HTEGRARNIAFAREQLDEVNTFYSHEMGEQIGQVVKESWWKPNSQGLLVNAIFFNLSWERTFN 183
              |||....|.....|.:..:|::.|::...:|.::|.:  ...|:..::||.:||...|...||
Mouse   158 LYHTEVFTANFQQPHEAMKLINSYMSNQTQGKIKELVSD--MDGNTSMVIVNDLFFKAEWMVPFN 220

  Fly   184 PEATYPREFRVNATKSVMIPMMH-EDSKFAFGILGNLKATAVLVPFSHGDLRMLLIKPDQPDGLA 247
            .:.|:..:|.|:.::.|.:|||. ::.:..:.....||.|.|.:.:. |:.:.:.|.||| ..:.
Mouse   221 SDDTFMGKFIVDRSRHVKVPMMKTKNLRTPYFRDEELKCTVVELNYK-GNGKAMFILPDQ-GKMQ 283

  Fly   248 ALQMKLQAMNILSVARNLTMMDV-FVGIPKFKIHSDLELSPAFEKMGIKDIFKPSKSFSTLLHRN 311
            .::..||...:....::|....: .:.:|||.:.....|.....::||:::|......|.:....
Mouse   284 QVEASLQPGTLKKWRKSLRPRKIKELHLPKFSLSQHYNLEDILPELGIRELFSTQADLSGITGVK 348

  Fly   312 TNFRIDGVIHVVTFEFQEQGI-GTPSTDVG----NGSLTHTFNGVKYFLATHPFAFYIIDNTSIY 371
             |..:..:||....:..|:|. |...|.||    :..|...|  ||:   ...|.:.::|...::
Mouse   349 -NITVSEMIHSTELDMTEKGTEGDAITIVGYNFMSAKLKPVF--VKF---EDQFLYIVLDQGDLW 407

  Fly   372 FAGHV 376
            .  ||
Mouse   408 I--HV 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn53FNP_001036553.1 SERPIN 25..376 CDD:238101 80/383 (21%)
Serpina3bNP_766612.1 SERPIN 51..414 CDD:294093 80/378 (21%)
RCL 367..392 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.