DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GstS1 and Gsta6

DIOPT Version :9

Sequence 1:NP_001261040.1 Gene:GstS1 / 36927 FlyBaseID:FBgn0010226 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001019532.1 Gene:Gsta6 / 501110 RGDID:1565402 Length:222 Species:Rattus norvegicus


Alignment Length:217 Identity:49/217 - (22%)
Similarity:99/217 - (45%) Gaps:21/217 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 EPIKHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRV-TRDEWPALKP--TMPMGQMPVLEVDGK 105
            :|:.|     |...:...|.:|:|.|....|||:..: |.::...|:.  .:...|:|::||||.
  Rat     4 KPLFH-----YDEARGRMESVRWLLAAAGVEYEEKFIHTNEDLEKLRSDGVLMFQQVPMVEVDGM 63

  Fly   106 RVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLSSEQFVSYEPEDE--IKEKKLVTL 168
            ::.|:.::..:.:....|.|....|...||:..:.:.|.   :|.|:.| |.|.  :||..:..:
  Rat    64 KLVQTRAIMNYFSSKYNLYGKDMKERALIDMYSEGLADL---NEMFILY-PFDPPGVKEANIALM 124

  Fly   169 NAEVIPFYLEKLEQTVKDN-DGHLALGKLTWADVYFAGITDYMNYMVKRDLLEPYPALRGVVDAV 232
            ..:....|....|:..:.: ..:|...||:.|||:...:. |....:..::|..:|.|:.:...:
  Rat   125 KEKATNRYFPAFEKVFESHGQDYLVGNKLSKADVHLVEMI-YNMEELDTNILANFPLLQALKTRI 188

  Fly   233 NALEPIKAWIE-----KRPVTE 249
            :.:..||.:::     :.||.|
  Rat   189 SDMPTIKKFLQPGSQRQPPVDE 210

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
GstS1NP_001261040.1 GST_N_Sigma_like 50..119 CDD:239337 17/71 (24%)
PTZ00057 52..245 CDD:173353 44/203 (22%)
GST_C_Sigma_like 129..232 CDD:198301 23/105 (22%)
Gsta6NP_001019532.1 Thioredoxin_like 4..82 CDD:412351 19/82 (23%)