DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GstS1 and Gsta1

DIOPT Version :9

Sequence 1:NP_001261040.1 Gene:GstS1 / 36927 FlyBaseID:FBgn0010226 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_113697.1 Gene:Gsta1 / 24421 RGDID:2753 Length:221 Species:Rattus norvegicus


Alignment Length:224 Identity:55/224 - (24%)
Similarity:107/224 - (47%) Gaps:32/224 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PAEPIKHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRV-TRDEWPALK--PTMPMGQMPVLEVD 103
            |.:|:.|     ||:.:...||:|:|.|....|:|:..: |||:...|:  .::...|:|::|:|
  Rat     2 PGKPVLH-----YFDGRGRMEPIRWLLAAAGVEFEEQFLKTRDDLARLRNDGSLMFQQVPMVEID 61

  Fly   104 GKRVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLSSEQFV---SYEPEDEIKEKKL 165
            |.::.|:.::..::|....|.|....|...||:..:.:.|.    ::.|   .|.|..| ||..|
  Rat    62 GMKLVQTRAILNYIATKYNLYGKDMKERALIDMYAEGVADL----DEIVLHYPYIPPGE-KEASL 121

  Fly   166 VTLNAEVIPFYLEKLEQTVKDN-DGHLALGKLTWADVYFAGITDYMNYMVKRDLLEP-----YPA 224
            ..:..:....|....|:.:|.: ..:|...:|:.||||...:.    |.|:.  |:|     :|.
  Rat   122 AKIKDKARNRYFPAFEKVLKSHGQDYLVGNRLSRADVYLVQVL----YHVEE--LDPSALANFPL 180

  Fly   225 LRGVVDAVNALEPIKAWI----EKRPVTE 249
            |:.:...|:.|..:|.::    :::|:.:
  Rat   181 LKALRTRVSNLPTVKKFLQPGSQRKPLED 209

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
GstS1NP_001261040.1 GST_N_Sigma_like 50..119 CDD:239337 19/71 (27%)
PTZ00057 52..245 CDD:173353 51/208 (25%)
GST_C_Sigma_like 129..232 CDD:198301 26/111 (23%)
Gsta1NP_113697.1 GST_N_Alpha 4..82 CDD:239375 22/82 (27%)