DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GstS1 and Gsta3

DIOPT Version :9

Sequence 1:NP_001261040.1 Gene:GstS1 / 36927 FlyBaseID:FBgn0010226 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_001070821.1 Gene:Gsta3 / 14859 MGIID:95856 Length:221 Species:Mus musculus


Alignment Length:206 Identity:46/206 - (22%)
Similarity:102/206 - (49%) Gaps:16/206 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 EPIKHSYTLFYFNVKALAEPLRYLFAYGNQEYEDVRV-TRDEWPALKP--TMPMGQMPVLEVDGK 105
            :|:.|     ||:.:...||:|:|.|....|:|:..: |||:...|:.  ::...|:|::|:||.
Mouse     4 KPVLH-----YFDGRGRMEPIRWLLAAAGVEFEEKFLKTRDDLARLRSDGSLMFQQVPMVEIDGM 63

  Fly   106 RVHQSISMARFLAKTVGLCGATPWEDLQIDIVVDTINDFRLSSEQFVSYEPEDEIKEKKLVTLNA 170
            ::.|:.::..::|....|.|....|...||:..:.:.|..:....:....||:  ||..|..:..
Mouse    64 KLVQTKAILNYIASKYNLYGKDMKERAIIDMYTEGVADLEIMILYYPHMPPEE--KEASLAKIKE 126

  Fly   171 EVIPFYLEKLEQTVKDN-DGHLALGKLTWADVYFAGITDYMNYMVKRD--LLEPYPALRGVVDAV 232
            :....|....|:.:|.: ..:|...:|:.||:   .:.:.:.::.:.|  :::.:|.|:.:...|
Mouse   127 QTRNRYFPAFEKVLKSHGQDYLVGNRLSRADI---ALVELLYHVEELDPGVVDNFPLLKALRSRV 188

  Fly   233 NALEPIKAWIE 243
            :.|..:|.:::
Mouse   189 SNLPTVKKFLQ 199

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
GstS1NP_001261040.1 GST_N_Sigma_like 50..119 CDD:239337 19/71 (27%)
PTZ00057 52..245 CDD:173353 44/198 (22%)
GST_C_Sigma_like 129..232 CDD:198301 19/105 (18%)
Gsta3NP_001070821.1 PTZ00057 1..198 CDD:173353 46/203 (23%)
GST_N_Alpha 4..82 CDD:239375 22/82 (27%)