DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30460 and Zc2hc1a

DIOPT Version :10

Sequence 1:NP_611186.2 Gene:CG30460 / 36924 FlyBaseID:FBgn0050460 Length:1868 Species:Drosophila melanogaster
Sequence 2:XP_006232206.1 Gene:Zc2hc1a / 310244 RGDID:1311970 Length:363 Species:Rattus norvegicus


Alignment Length:379 Identity:100/379 - (26%)
Similarity:138/379 - (36%) Gaps:125/379 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 SGSSIPVPEYVPEQSTQLTPCPCCSRTFAVDTLRKHVVICEK-ASKKRKIFDSSRQRRDGTALST 297
            :||.:.|.|        |.||..|.|||....|:||..||:| |:||||.|||||||.:||.:.|
  Rat     7 NGSVVQVGE--------LLPCKICGRTFFPLALKKHGPICQKTATKKRKTFDSSRQRAEGTDIPT 63

  Fly   298 YVLPKNFGLPNAERTAGLPSPPINSRETTSVNAAPETVNSPLPVRRKSQTEMVRSTARASLRKAA 362
            .                   .|:..|        ||....|...|||.: |.:     |::| ||
  Rat    64 V-------------------KPLKPR--------PEPPKKPSNWRRKHE-EFI-----ATIR-AA 94

  Fly   363 STLSSNSTPEAPAMAPAASTAPAAPAAPAAPAAPLVRERSLAKRIKAPPCDRCPHCDRTFNPKAF 427
            ..|..       |:.......|..|.:                  ..|...:||:|.|.||..|.
  Rat    95 KGLDQ-------ALKEGGKLPPPPPPS------------------YDPDYIQCPYCQRRFNENAA 134

  Fly   428 DRHVEWCKEKAIQATMKSTNSQETSKAKERLEARKQYRPPNLKTKRSLARDKYSGNHEEVLEAGE 492
            |||:.:|||:|.:.:.|...|.: ||.|.  .:|.||:|..||          ..|......:|.
  Rat   135 DRHINFCKEQAARISNKGKYSTD-SKGKP--ASRPQYKPSPLK----------KSNPPASTSSGS 186

  Fly   493 MTTPKPNLMSHSM-------TSSVHS---DNTQAQVSSSRG------------------------ 523
            ...|:|:..|.::       .|||:|   :..|....|.|.                        
  Rat   187 SRLPQPSTTSKTIVGVPTGKASSVNSPLGNKPQTLSPSHRALAAPQAGKMDKLGPPLRTGRRVQR 251

  Fly   524 --GSRAKANSTVTQNQV--------NLFNEDPPSSPPPRERSALRRSKRTQRES 567
              ||..|:||...::::        ...|..|||.........|...::|..||
  Rat   252 LYGSDTKSNSAFKRHELVPVCKANTKSRNTTPPSLARNSVAGVLTNKRKTFTES 305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30460NP_611186.2 zf-C2HC_2 250..274 CDD:464037 11/23 (48%)
zf-C2HC_2 414..435 CDD:464037 10/20 (50%)
Zc2hc1aXP_006232206.1 zf-C2HC_2 15..39 CDD:464037 12/31 (39%)
PRK12495 <122..>234 CDD:183558 37/124 (30%)

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