DRSC/TRiP Functional Genomics Resources

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Protein Alignment fat-spondin and Sspo

DIOPT Version :9

Sequence 1:NP_477435.1 Gene:fat-spondin / 36919 FlyBaseID:FBgn0026721 Length:763 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:784 Identity:157/784 - (20%)
Similarity:247/784 - (31%) Gaps:313/784 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 EVQVMW-------VAPESGSGCVSLSAMVYEGPRAWFADDG--------NLSTVICERKPDAAAA 181
            ::.::|       :...:||....:|.:..:     |:.||        :||:.:...||...::
  Rat  2122 QLDLLWPRNLTGIMVQRAGSSAAYISNLSLQ-----FSSDGLQWHSVLNSLSSTLPPPKPSPESS 2181

  Fly   182 Q---KECCACD---EAKYSFVFEGIWSNETHPKDYPFAIWLTHFSDVIGASHESNFSFW------ 234
            .   .|....|   :|:|.    .:|.:.:|.:|                :::.:...|      
  Rat  2182 NHMVPEVWTFDQMVQARYI----RVWPHGSHLRD----------------NNQQDIFLWVELLGC 2226

  Fly   235 -----------GENHIATAGFRSLAEWGSPAALETE----------LRAN-GPKLRTLIKAAGLW 277
                       |..|....|..:|.......|::.|          |||: ..::.:..:.    
  Rat  2227 KPVPPLAPLCPGTRHRCANGDCALKGGPCDGAVDCEDGSDEEGCGPLRASTASRVHSTART---- 2287

  Fly   278 YPNVNQNTSSKFRVDRKHPKVSLVSM-------------FGPSP---DWVVGISGLDLCTEDCSW 326
             |.::.....||..   ||:..|..|             .|.||   :.::.:||..:.|...: 
  Rat  2288 -PALSPTQPGKFPF---HPREGLADMEHQQPKQESPMPSAGVSPSASEGLLPVSGQSMQTLTTT- 2347

  Fly   327 KESMDFDLFPWDAGTDSGISYMSPNSETQPPERMYRITTMYPED--PRAPFYNPKSREMTPLAKL 389
                  ..||      .|:..:.|.        |..:|...|..  |..|.....|....||.:.
  Rat  2348 ------STFP------PGLKSLHPG--------MAAVTVHSPHSVMPGTPVGQSVSPRPFPLMRC 2392

  Fly   390 -----------YLRREKIVSRNCDDEFLQALQLEVSDDAEEQD-------------------TRA 424
                       .:.:|::    ||.      :.:..|.::||.                   :||
  Rat  2393 GPGQVPCDVLGCVEQEQL----CDG------REDCLDGSDEQHCASPEPFTVPTTALPGLPASRA 2447

  Fly   425 ECRVGDYSAWSPCSVSCGKGIRMRSRQYLYPAAADQNKCARQLVAKEMCVAAIPECADGPAQSKD 489
            .|        ||..:|||.|          .....:::|..|:           .|.||    .|
  Rat  2448 LC--------SPSQLSCGSG----------ECLPLEHRCDLQV-----------NCQDG----SD 2479

  Fly   490 RDD--DEGENLANSQSLVGSNGEGAGLCKTSPWSVWSECSASCGIGITMRTRTFVNHLGRKRCPH 552
            .||  |                     |..:|||.||:||.|||:|:                  
  Rat  2480 EDDCVD---------------------CVLAPWSGWSDCSRSCGLGL------------------ 2505

  Fly   553 ITIVEKNKCMRP-----DCTYEQVELPDP----QCPT----SQWSDWSPCSSTCGRGVTIRTRLL 604
              |.:..:.:||     .|..:|:. ..|    .||.    ::|..|.|||.:||.|...|.|..
  Rat  2506 --IFQHRELLRPPLPGGSCLLDQLR-SQPCFVQACPVAGAWAKWGPWEPCSVSCGGGHQSRQRSC 2567

  Fly   605 L---LEN------GPDKESCTQRMELHQQKECVNPIDC-----HINAEQAKDICVQA---PDPGP 652
            :   .:|      ||..|.....::|     |....||     |:|||    :|.:.   |.|..
  Rat  2568 VDPPPKNGGAPCPGPSHEKVLCNLQL-----CPGDTDCEPGRVHVNAE----LCQKGLLPPCPPS 2623

  Fly   653 CRGTYMRYAYDPQ-NQHCYSFTYGGCRGNRNNFLTENDC----------------------LNTC 694
            |        .||: |:.|......|||.....||.::.|                      |:.|
  Rat  2624 C--------LDPEANRSCSGHCVEGCRCPPGLFLQDSHCLPLSECPCLVGQKLMQPGLAFLLDNC 2680

  Fly   695 NVLRSPYSSRVDQPRACVLS-DWSVWSP---CSVSCGVGVSESRRYVVTEPQN-GGQPCSKRLVK 754
            :.........:.:|.||..| .||.|||   |..|||.||....|.....|.. ||.||.....:
  Rat  2681 SQCICESGILLCKPAACSQSCGWSAWSPWTACDHSCGSGVRARFRSPTNPPAAFGGSPCEGDRQE 2745

  Fly   755 SRSC 758
            .::|
  Rat  2746 LQAC 2749

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fat-spondinNP_477435.1 Reeler 24..172 CDD:260081 9/54 (17%)
Spond_N 191..378 CDD:283999 37/232 (16%)
TSP1 428..473 CDD:214559 8/44 (18%)
TSP1 518..566 CDD:214559 14/52 (27%)
TSP1 581..627 CDD:214559 15/54 (28%)
Kunitz_BPTI 643..694 CDD:278443 15/76 (20%)
TSP1 714..763 CDD:214559 19/50 (38%)
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 393..468 CDD:285899
TIL 472..527 CDD:280072
VWD 556..716 CDD:214566
C8 769..826 CDD:285899
TIL 830..883 CDD:280072
VWD 1019..1168 CDD:278521
C8 1206..1276 CDD:285899
TIL 1280..1336 CDD:280072
LDLa 1381..1416 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1457..1491 CDD:238060
LDLa 1497..1528 CDD:197566
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567
Ldl_recept_a 1568..1604 CDD:278486
TSP1 1702..1753 CDD:214559
TSP1 1758..1812 CDD:214559
TIL 1822..1873 CDD:280072
TSP1 1917..1970 CDD:214559
FA58C 2070..2226 CDD:214572 19/128 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109
FA58C <2111..2225 CDD:238014 19/127 (15%)
LDLa 2236..2270 CDD:238060 6/33 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335 14/80 (18%)
LDLa 2392..2426 CDD:238060 6/43 (14%)
LDLa 2449..2483 CDD:238060 14/66 (21%)
TSP1 2490..2538 CDD:214559 17/68 (25%)
TSP1 2543..2595 CDD:214559 15/56 (27%)
TIL 2618..2660 CDD:280072 13/49 (27%)
TSP1 2703..2752 CDD:214559 18/47 (38%)
TSP1 2760..2813 CDD:214559
TSP_1 2819..2867 CDD:278517
TIL 2871..2930 CDD:280072
VWC_out 2932..2979 CDD:214565
TSP1 2972..3023 CDD:214559
TIL 3075..3127 CDD:280072
TSP1 3240..3292 CDD:214559
TIL 3300..3350 CDD:280072
TSP1 3396..3439 CDD:214559
TSP1 3460..3504 CDD:214559
TIL 3514..3570 CDD:280072
TSP1 3633..3677 CDD:214559
TSP1 3810..3862 CDD:214559
TSP1 3879..3927 CDD:214559
TSP1 3945..3998 CDD:214559
TSP1 4003..4055 CDD:214559
TIL 4058..4113 CDD:280072
TSP1 4158..4208 CDD:214559
TSP1 4252..4303 CDD:214559
TSP1 4367..4418 CDD:214559
TIL 4422..4477 CDD:280072
TSP1 4611..4659 CDD:214559
TIL 4673..4719 CDD:280072
TSP1 4763..4812 CDD:214559
TIL 4814..4868 CDD:280072
TIL 4920..4978 CDD:280072
VWC 4980..5035 CDD:302663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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