DRSC/TRiP Functional Genomics Resources

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Protein Alignment fat-spondin and Thsd7b

DIOPT Version :9

Sequence 1:NP_477435.1 Gene:fat-spondin / 36919 FlyBaseID:FBgn0026721 Length:763 Species:Drosophila melanogaster
Sequence 2:XP_038946352.1 Gene:Thsd7b / 289007 RGDID:1306938 Length:1609 Species:Rattus norvegicus


Alignment Length:615 Identity:140/615 - (22%)
Similarity:214/615 - (34%) Gaps:215/615 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   320 CTEDCSWKESMDFDLFPWDAGTDSGISYMSPNSETQPPERMYRI-------------TTMYPED- 370
            |.:||......::...||..         .|.:.|....| |||             .|::.|. 
  Rat   734 CKKDCLVTAFSEWRPCPWPC---------QPGNTTIKQSR-YRIIIQEAANGGQECPDTLFEERE 788

  Fly   371 ----PRAPFYNPKSREMTP--LAKLYLRREKIVSRNCDDEFLQALQLE-VSDDAEEQD------- 421
                ...|.|..|.::.:|  |....:|:.:..:.....:.||...:. :|||.:..:       
  Rat   789 CEDISLCPTYRWKPQKWSPCILVPESIRQGRTGTSEACGKGLQTRDVSCISDDNQSAEMTECLRQ 853

  Fly   422 --------------TRAECRVGDYSAWSPCSVSCGKGIRMRSRQY--------------LYPAAA 458
                          .|.:|....:|.::|||.:| :..::|.||.              |||   
  Rat   854 MNGMPPLVQECTIACREDCTFTPWSKFTPCSKNC-EATQIRRRQLTGKSRKKERCQDASLYP--- 914

  Fly   459 DQNKCARQLVAKEMC--------------VAAIPECADGP------AQSKDRDDDEGENL----- 498
                    ||..|.|              ...:||....|      .|..|::..||...     
  Rat   915 --------LVELEPCPCDAFMSHPYGNWSACILPEGKRDPQQGGLWVQGDDKECGEGVRFRAIAC 971

  Fly   499 --ANSQ----SLVGSNG---EGAGL-----CKTSPWSVWSECSASCGIGITMRTRTFVN--HLGR 547
              .|.:    |...|:|   |...:     ||.|.||.|..||:|||||:.:|::....  :.|.
  Rat   972 TDINGRPVDPSFCNSSGYIQEACVIPCPFDCKLSDWSSWGSCSSSCGIGVRIRSKWLKEKPYSGG 1036

  Fly   548 KRCPHITIVEKNKCMRPDCTYEQVELPDP---QCPTSQW--SDWSPC-------SSTCGRGVTIR 600
            :.||.:.:  ||:.        ||....|   :|....|  ..||||       |..||||...|
  Rat  1037 RPCPKLDL--KNQA--------QVHEAVPCYSECDQYSWVVEHWSPCKINNELRSPRCGRGTQSR 1091

  Fly   601 TRLLLL-----ENGP-DKESCTQRMELHQQKEC--VNPIDCHINAEQAKDICVQAPDPGPCRGTY 657
             |:..:     |.|. |:..|.|.....:.:.|  :.|.:|.::.......|.|:.||   ..|.
  Rat  1092 -RIRCVSTADREGGAVDRSLCNQDDAPPETQACSLLCPSECVMSEWGTWSKCPQSCDP---HATQ 1152

  Fly   658 MRYAY-------------DPQ------NQHCYSFTY-----GGCRGNRNNFLTEN-DC------- 690
            .|..:             |.|      |::|:.|.|     ..|:      |:|| .|       
  Rat  1153 RRTRHLLRPSLNSRTCGEDSQVRPCLLNENCFQFQYNLTEWSTCQ------LSENISCGQGVRTR 1211

  Fly   691 LNTCNVLRS---PYS------SRVDQPRA------------CVLSDWSVWSPCSVSCGVGVSESR 734
            |.:|  :||   |.|      ..:|:|:.            |.||.|:.|:.||.:||.|...||
  Rat  1212 LLSC--VRSDGKPVSMDHCEERNLDKPQRMSIPCLVECVVNCQLSGWTTWTECSQTCGQGGRMSR 1274

  Fly   735 -RYVVTEPQNGGQPCSKRLVKSRSCAMPAC 763
             |:::...|..|:.|...|.:.:.|.:..|
  Rat  1275 TRFIIMPTQGEGRRCPTELTQQKPCPVTPC 1304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fat-spondinNP_477435.1 Reeler 24..172 CDD:260081
Spond_N 191..378 CDD:283999 15/75 (20%)
TSP1 428..473 CDD:214559 14/58 (24%)
TSP1 518..566 CDD:214559 17/49 (35%)
TSP1 581..627 CDD:214559 17/60 (28%)
Kunitz_BPTI 643..694 CDD:278443 18/82 (22%)
TSP1 714..763 CDD:214559 16/49 (33%)
Thsd7bXP_038946352.1 TSP1_ADAMTS 44..95 CDD:408800
TSP1_spondin 180..229 CDD:408798
TSP1_spondin 337..398 CDD:408798
TSP1_spondin 602..660 CDD:408798
TSP1_ADAMTS 665..734 CDD:408800 140/615 (23%)
TSP1_spondin 738..789 CDD:408798 11/60 (18%)
TSP1_ADAMTS 1065..1125 CDD:408800 18/60 (30%)
TSP1_spondin 1131..1177 CDD:408798 9/48 (19%)
TSP1_spondin 1251..1304 CDD:408798 18/52 (35%)
TSP1_spondin 1374..1433 CDD:408798
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 48 1.000 Domainoid score I11593
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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